View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9284_high_10 (Length: 574)
Name: NF9284_high_10
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 556
Target Start/End: Original strand, 15789000 - 15789545
Alignment:
| Q |
11 |
gaagcagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttgtccagaaacatataaatg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15789000 |
gaagtagagaaagtcacattgcaatgaataatcgttttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttatccagaaacatataaatg |
15789099 |
T |
|
| Q |
111 |
tgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaattacaaatttggttttcaaaa |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15789100 |
cgatgtttatagttttggtattgttctatttgaaattgtaggtagaagaacgcattttattgatcctacatatagtgaatcacaaatttggttttcaaaa |
15789199 |
T |
|
| Q |
211 |
aggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaagg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15789200 |
aggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaagg |
15789299 |
T |
|
| Q |
311 |
ttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattttacaggctccatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15789300 |
ttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattttacaggctccatt |
15789399 |
T |
|
| Q |
411 |
tcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatctttg |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15789400 |
tcccttccataatcgggtttcggttaaagaaaattcgacacaagaggggagcactgcatattctaatactgcaacctcatcatggcatacataatctttg |
15789499 |
T |
|
| Q |
511 |
agagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15789500 |
agagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
15789545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 15793200 - 15793743
Alignment:
| Q |
10 |
agaagcagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttgtccagaaacatataaat |
109 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||| ||||| ||||| || ||||| ||||| |||||||||||| ||| ||||| |||||||| | |
|
|
| T |
15793200 |
agaagtagagaaagtaacattgaactgaatactcactttagaggaacgagaggatatgccgcaccagaaatgtggaagccttatccagtgacatataagt |
15793299 |
T |
|
| Q |
110 |
gtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaattacaaatttggttttcaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||| || |||| ||| ||| |||||||||| |||| |||||| ||| |
|
|
| T |
15793300 |
gtgatgtttatagttttggtattcttttatttgaaattgtagggagaagacggcatttt---gattctagctatagtgaatcacaacaatggtttccaag |
15793396 |
T |
|
| Q |
210 |
aaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaag |
309 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
15793397 |
atggacatgggaaatgtttgagaataatgaattggttgttatgcttgcactttgtgaaattgaagagaaagatagtgagatagcagagagaatgttaaag |
15793496 |
T |
|
| Q |
310 |
gttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattt-tacaggctcca |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| || |||| | || ||||| |
|
|
| T |
15793497 |
gttgctctatggtgtgttcaatattcaccaaatgatagacctctaatgagtactgttgtgaagatgttagagggtgaaattgatatttcttca-cctcca |
15793595 |
T |
|
| Q |
409 |
tttcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatctt |
508 |
Q |
| |
|
||||| || ||||||| |||| | | ||||||||||||| |||||||||| || |||||| |||||||||| | || |||||||||| ||| |||||| |
|
|
| T |
15793596 |
tttccttttcataatctggttcctgctaaagaaaattcgacacaagagggaagtactgcagattctgatacgactacatcatcatggcgtaccgaatctt |
15793695 |
T |
|
| Q |
509 |
tgagagaatctggtttcagagccaaacaaaatacatttcagattgaaa |
556 |
Q |
| |
|
||||| |||||||| | | ||||||| ||| ||||| ||||||||| |
|
|
| T |
15793696 |
caagagagtctggttttaaaaccaaacacaatgcatttgagattgaaa |
15793743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 519
Target Start/End: Complemental strand, 15778920 - 15778414
Alignment:
| Q |
10 |
agaagcagagaaagtcacattgcaatgaatactcgctttaaaggaaaagcagcttatgcagcacctgaaatgtggaaggcttgtccagaaacatataaat |
109 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||| ||||| ||||| || |||||| |||||||||||||||||| ||| ||||| ||| | || | |
|
|
| T |
15778920 |
agaagtagagaaagtaacattgtaatgaatactcactttagaggaacgcgaggttatgctgcacctgaaatgtggaagccttatccagttacacacaagt |
15778821 |
T |
|
| Q |
110 |
gtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaacgcgttttattgatcctacatatagtgaattacaaatttggttttcaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||| || ||| ||| ||| || ||||||| ||| |||||| |||| |
|
|
| T |
15778820 |
gtgatgtttatagttttggtattcttctatttgaaattgttggcagaagaaggcatttc---gattctagttacagtgaatcgcaacaatggtttccaaa |
15778724 |
T |
|
| Q |
210 |
aaggacatgggaaatgtttgagaatagtgaattggttgctatgcttgaattttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| ||||| ||| ||||||||||| ||| |
|
|
| T |
15778723 |
gtggacatgggaaatgtttgagaataatgaattggttgttatgcttgcgctttgtggagttgaagagaaagataatgagatagcagagagaatgttgaag |
15778624 |
T |
|
| Q |
310 |
gttgctcaatggtgtgttcaatattcaccagatgatagacctttaatgagtactgttgtgaagatgttggagggtgaaaaagaaattt-tacaggctcca |
408 |
Q |
| |
|
||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||| | || ||||| |
|
|
| T |
15778623 |
gttgctctatggtgtgttcagtattcaccaaatgatagacctctaatgagtactgttgtaaagatgttagagggtgaaattgaaatttcttca-cctcca |
15778525 |
T |
|
| Q |
409 |
tttcccttccataatcgggtttcggttaaagaaaattcggcacaagaggggagcactgcatattctgatactgcaacctcatcatggcatacataatctt |
508 |
Q |
| |
|
|||||||||||||||| |||| | ||||||||||||| | ||||||| || ||||||||| |||||||| || | | ||||| ||| ||||| |||||| |
|
|
| T |
15778524 |
tttcccttccataatctggttcctgttaaagaaaatttgacacaagaaggaagcactgcagattctgatgctactatatcatcgtggaatacagaatctt |
15778425 |
T |
|
| Q |
509 |
tgagagaatct |
519 |
Q |
| |
|
| || |||||| |
|
|
| T |
15778424 |
ttagcgaatct |
15778414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 15773079 - 15773135
Alignment:
| Q |
104 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||||| |||| |
|
|
| T |
15773079 |
ataaatgtgatgtttatagttttggtatgctattatttgaaattataggtaggagaa |
15773135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 15794889 - 15794833
Alignment:
| Q |
104 |
ataaatgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||| ||||| |||| |
|
|
| T |
15794889 |
ataaatgtgatgtttatagttttggtatgctgttatttgaaattgttggtaggagaa |
15794833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 15768453 - 15768504
Alignment:
| Q |
109 |
tgtgatgtttatagttttggtattcttctatttgaaattgtaggtagaagaa |
160 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||| ||||||| |||| |
|
|
| T |
15768453 |
tgtgacgtttatagttttggtatactactatttgaaattataggtaggagaa |
15768504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 15773232 - 15773305
Alignment:
| Q |
260 |
tttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaaggttgctcaatggtgtgttcaatat |
333 |
Q |
| |
|
|||||||||| ||||||||| ||| |||| |||||||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
15773232 |
tttgtggaatagaagagaaaaataaagagattgctgagagaatgattaaggtagctttatggtgtgttcaatat |
15773305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 15794736 - 15794663
Alignment:
| Q |
260 |
tttgtggaattgaagagaaagatactgagaaagctgagagaatgttaaaggttgctcaatggtgtgttcaatat |
333 |
Q |
| |
|
|||||||||| ||||||||| ||| |||| |||||||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
15794736 |
tttgtggaatagaagagaaaaatagagagattgctgagagaatggttaaggtagctttatggtgtgttcaatat |
15794663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University