View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9284_high_19 (Length: 327)

Name: NF9284_high_19
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9284_high_19
NF9284_high_19
[»] chr5 (9 HSPs)
chr5 (1-312)||(13413886-13414199)
chr5 (76-227)||(13426921-13427072)
chr5 (63-227)||(13419971-13420135)
chr5 (108-193)||(13388782-13388867)
chr5 (135-196)||(13447595-13447656)
chr5 (73-193)||(13393158-13393278)
chr5 (78-184)||(13454357-13454463)
chr5 (92-199)||(13409248-13409355)
chr5 (74-193)||(13384946-13385065)
[»] chr4 (1 HSPs)
chr4 (76-206)||(47601696-47601826)
[»] chr8 (1 HSPs)
chr8 (108-196)||(28429306-28429394)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 13413886 - 13414199
Alignment:
Q  1 atttagaatgagtattagtatagtatatttacaaacatgggtagtactaatgataacaataaaaggagttcaaaacatacccaggaacaagtggatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413886 atttagaatgagtattagtatagtatatttacaaacatgggtagtactaatgataacaataaaaggagttcaaaacatacccaggaacaagtggatagaa 13413985  T
Q  101 ggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13413986 ggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaa 13414085  T
Q  201 ttttggtgtaccaaagttgaattaatttgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagac--aaaat 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  13414086 ttttggtgtaccaaagttgaattaatttgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagacaaaaaat 13414185  T
Q  299 aattccatctaaat 312  Q
    ||||| ||||||||    
T  13414186 aattcaatctaaat 13414199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 13426921 - 13427072
Alignment:
Q  76 catacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctac 175  Q
    ||||||| ||||| | |||||||| |||| ||||||||||||||||   |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  13426921 cataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctac 13427020  T
Q  176 atctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 227  Q
    |||||| ||||| ||||||||||| ||||| || | ||||||| ||||||||    
T  13427021 atctttctcacctgtttccctaaagttttgatgcatcaaagttaaattaatt 13427072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 13419971 - 13420135
Alignment:
Q  63 aaggagttcaaaacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaaca 162  Q
    ||||||||  || ||||||| ||||| | |||||||| |||| | ||||||||||||||   ||||||||| |||| ||| ||||| |||||||||| ||    
T  13419971 aaggagttggaagcataccctggaactaatggatagatggaatttccccattcattcttcatcatatggaggtcagtgtggcatataccacaatacatca 13420070  T
Q  163 ccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 227  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||| || | |||  |||||||||||    
T  13420071 ccttgaacgctacatctttctcaccagtttccctaaagttttgatgcatcaagattgaattaatt 13420135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 13388867 - 13388782
Alignment:
Q  108 ccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc 193  Q
    |||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  13388867 ccccattcattcttcgccatgtggacatctgagtgacatatcccacaatacaatattttgaatgccacatctttttcaccagtttc 13388782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 13447595 - 13447656
Alignment:
Q  135 tcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct 196  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  13447595 tcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccct 13447656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 13393278 - 13393158
Alignment:
Q  73 aaacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgc 172  Q
    |||| ||||||||||| |||||||||   ||  ||||||||||||||||   |||||| ||||| ||||||||||||||||||||||  || || |||||    
T  13393278 aaacgtacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgc 13393179  T
Q  173 tacatctttttcaccagtttc 193  Q
     |||||||||||||| |||||    
T  13393178 cacatctttttcacccgtttc 13393158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 13454357 - 13454463
Alignment:
Q  78 tacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacat 177  Q
    ||||| ||||| |||||||||   | |||||||||||||||||| ||| |||| || || ||||||||||| ||||||||||||||  | |||||||| |    
T  13454357 tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt 13454456  T
Q  178 ctttttc 184  Q
    |||||||    
T  13454457 ctttttc 13454463  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 13409355 - 13409248
Alignment:
Q  92 tggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtt 191  Q
    |||||||  ||| ||||||||| | ||||| ||||| ||||| || | ||| ||||| || ||||||||||| |||||||| |||||||| ||||| |||    
T  13409355 tggataggtggatgtgccccatccgttcttggccatgtggaggtctgtgtggcatattccgcaatacaacactttgaatgccacatctttctcacctgtt 13409256  T
Q  192 tccctaaa 199  Q
    ||||||||    
T  13409255 tccctaaa 13409248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 13385065 - 13384946
Alignment:
Q  74 aacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgct 173  Q
    ||||||||| ||||| |||||||||   ||  |||||||||| ||||| |||||   || ||| ||||||||||| ||||||||||| |  ||||||||     
T  13385065 aacataccccggaactagtggataggttgatatgccccattcgttcttcgccatgcagacatctgagtgacatattccacaatacaatattttgaatgcc 13384966  T
Q  174 acatctttttcaccagtttc 193  Q
    ||||||||||| || |||||    
T  13384965 acatctttttctcctgtttc 13384946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 47601696 - 47601826
Alignment:
Q  76 catacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctac 175  Q
    ||||||||||||| |||||||||  |||  |||||||||||||||||  ||| |||||||| | ||||||||| |||||| |||| |  |||| ||  ||    
T  47601696 catacccaggaactagtggataggtggatatgccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacac 47601795  T
Q  176 atctttttcaccagtttccctaaaattttgg 206  Q
    ||||||||||   |||||||| ||| |||||    
T  47601796 atctttttcatttgtttccctgaaagtttgg 47601826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 28429394 - 28429306
Alignment:
Q  108 ccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct 196  Q
    ||||||||||||||   ||| || ||||| ||||||||||| |||||| | | ||| ||||||  ||||||||| || |||||||||||    
T  28429394 ccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaatagcactttgaatcttacatctttctctccagtttccct 28429306  T

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