View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_high_2 (Length: 931)
Name: NF9284_high_2
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 765
Target Start/End: Original strand, 32726658 - 32727423
Alignment:
| Q |
1 |
attttttgtttgttgaccgtcatcatcggggtcattgttgacctgatggtgaggtctacttatcccccgccagcttcgagtgatccagcatcgccatcga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32726658 |
attttttgtttgttgaccgtcatcatcggggtcattgttgacccgatggtgaggtttacttatcccccgccaacttcgagtgatccagcatcgccatcga |
32726757 |
T |
|
| Q |
101 |
cctggccgccgaaggtctcgtatttcatattcggttttgccggacttctgtgtttcttgttggctttggttgacgttgtggttcgttttgttcgttggat |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726758 |
cctagccgccgaaggtctcgtatttcatattcggttttgccggacttctgtgtttcttgttggctttggttgacgttgtggttcgttttgttcgttggat |
32726857 |
T |
|
| Q |
201 |
gaggaagaggaagacaacagataggcgagtaagtcctcatcagataannnnnnnaaagaaaaataagtaaatataatgtatggtccttttaacacatata |
300 |
Q |
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| T |
32726858 |
gaggaagaggaagacaacagataggcgagtaagtcctcatcagataatttttttaaagaaaaataagtaaatataatatatggtccttttaacacatata |
32726957 |
T |
|
| Q |
301 |
gccaaatgaatgcaggatattgaattaatgagttcttgtttgtacaggttgaagtatgtgttagtagtaaagaaacnnnnnnnnnnnnnnnnnnnnnnca |
400 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
32726958 |
gccaaatgaatataggatattgaattaatgagttcttgtttgtacgggttgaagtatgtgttagtagtaaagaaacttttttttttgttttgtttttgca |
32727057 |
T |
|
| Q |
401 |
gagacgactataatgtagatatacactttcatcctgtcgaccttcatcatcgcgtcattgccgactcgatggtgagatccacctatcctccgccagcttc |
500 |
Q |
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| T |
32727058 |
gagacgactataatgtagatatacactttcatcctgtcgaccttcatcatcgcgtcattgccgactcgatggtgagatccacctatcctccgccaacttc |
32727157 |
T |
|
| Q |
501 |
aagtgtgccagcgacgtcgttgatcg-aaaaatacataaatttattttttacattttaaacgtgagaaatagatttcgcacatacgcgcgtgcgtacaca |
599 |
Q |
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| T |
32727158 |
aagtgtgccagaactgtcgttgatcggaaaaatacataaatttattttttacattttaaacgtgagaaatagatttcacacatacgcgcgtgcgtacaca |
32727257 |
T |
|
| Q |
600 |
tacatataagtttttcaacaaaaatcatattcatgcgttagataaggataagatgcaaacatgtctcaaaattaaaatgaataaatttgtcgttgactat |
699 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32727258 |
cacatataagtttttcaataaaaatcatattcatgcgttagataaggataagatgcaaacatgtctcaaaattaaaatgaataaatttgtcgttgactat |
32727357 |
T |
|
| Q |
700 |
atataatggatcataaattttaattacatcaattgcatccacaaacaaatacacaatttcgatttg |
765 |
Q |
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| T |
32727358 |
atataatggatcataaattttaattacatcaattgcatccacaaacaaatacacaatttcgatttg |
32727423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 828 - 923
Target Start/End: Original strand, 32727483 - 32727578
Alignment:
| Q |
828 |
atttaagtgaaaaaatatctatccaataaatatttatgcacttatgaagagaagttgatatatgcatggttcccacattattttatctctctgctc |
923 |
Q |
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| T |
32727483 |
atttaagtgaaaaaatatttatccaataaatatttatgcacttatgaagagaatttgatatatgcatggatcccacattattttatctctctgctc |
32727578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 654833 - 654733
Alignment:
| Q |
260 |
aaaataagtaaatataatgtatggtccttttaacacatatagccaaatgaatgcaggatattgaattaat--gagttcttgtttgtacaggttgaagtat |
357 |
Q |
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||||||| |||||| |||| |||||||||||| |||||| |||||||||||| || ||||||||||||| |||| ||||||||||| | ||||| ||| |
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| T |
654833 |
aaaataaataaata-aatgcatggtccttttatcacatacagccaaatgaatatagaatattgaattaattagagtccttgtttgtacggcttgaaatat |
654735 |
T |
|
| Q |
358 |
gt |
359 |
Q |
| |
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|| |
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|
| T |
654734 |
gt |
654733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 734
Target Start/End: Complemental strand, 48715783 - 48715754
Alignment:
| Q |
705 |
atggatcataaattttaattacatcaattg |
734 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
48715783 |
atggatcataaattttaattacatcaattg |
48715754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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