View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9284_high_23 (Length: 242)

Name: NF9284_high_23
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9284_high_23
NF9284_high_23
[»] chr8 (7 HSPs)
chr8 (17-230)||(35889618-35889838)
chr8 (139-191)||(37117539-37117591)
chr8 (141-192)||(10732792-10732843)
chr8 (141-192)||(33445563-33445614)
chr8 (115-192)||(32232368-32232445)
chr8 (126-178)||(33555437-33555489)
chr8 (138-170)||(44037379-44037411)
[»] chr1 (4 HSPs)
chr1 (142-192)||(35308178-35308228)
chr1 (126-191)||(32998899-32998964)
chr1 (139-191)||(27853349-27853401)
chr1 (137-193)||(50595896-50595952)
[»] chr5 (6 HSPs)
chr5 (126-190)||(20175720-20175784)
chr5 (115-174)||(176064-176122)
chr5 (126-184)||(1642335-1642393)
chr5 (146-184)||(17627018-17627056)
chr5 (142-192)||(41939280-41939330)
chr5 (141-189)||(1082236-1082284)
[»] chr4 (7 HSPs)
chr4 (141-193)||(12192508-12192560)
chr4 (138-174)||(28568216-28568252)
chr4 (146-192)||(53468593-53468639)
chr4 (138-191)||(9913893-9913946)
chr4 (141-194)||(11949780-11949833)
chr4 (130-191)||(50774567-50774628)
chr4 (146-190)||(22411759-22411803)
[»] chr6 (2 HSPs)
chr6 (141-192)||(9111040-9111091)
chr6 (130-191)||(7082998-7083059)
[»] chr3 (3 HSPs)
chr3 (137-192)||(2753717-2753772)
chr3 (141-184)||(7938725-7938768)
chr3 (130-190)||(37364435-37364495)
[»] chr7 (4 HSPs)
chr7 (141-191)||(47667955-47668005)
chr7 (139-192)||(34369472-34369525)
chr7 (142-194)||(10461782-10461834)
chr7 (113-161)||(32896453-32896501)
[»] chr2 (5 HSPs)
chr2 (141-191)||(11560492-11560542)
chr2 (139-192)||(9517024-9517077)
chr2 (139-192)||(11931598-11931651)
chr2 (141-194)||(20455882-20455935)
chr2 (139-192)||(32204537-32204590)
[»] scaffold0098 (1 HSPs)
scaffold0098 (139-191)||(5419-5471)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 35889838 - 35889618
Alignment:
Q  17 aggaagttgatcaaagaatgactagatttgtggagttgctgtagatgctgactaactaggatgtatttgaagaatgttatcaaacatgttgtgcac---- 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||        
T  35889838 aggaagttgatcaaagaatgactagatttgtggagttgctgtagatgctgactaactaggatgtatttgaagaatgttatgaaacatgttttgcactttt 35889739  T
Q  113 ---tgtggtggctaatgttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacacatattgtgcactttaa 209  Q
       | |||||||||||||||||||  || | ||| | ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  35889738 ttttttggtggctaatgttcgaaccgtagaccttatgtatattatgcattgtccgtaccaattgaattatgctcatgaggacacatgttgtgcactttaa 35889639  T
Q  210 atacgatcaagtgatatatca 230  Q
    |||||||||| ||||||||||    
T  35889638 atacgatcaaatgatatatca 35889618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 37117539 - 37117591
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||||| |||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  37117539 atcttgaatatattatgcattgttcataccaattgatctaagctcacgaggac 37117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 10732792 - 10732843
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    ||||||||||||||||||||||| ||||||||||  || ||||| |||||||    
T  10732792 cttgtatatattatgcattgttcataccaattgagttaagctcacgaggaca 10732843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 33445614 - 33445563
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||| |||||||    
T  33445614 cttgtatatattatgcattgttcctaccaactgagctaagctcacgaggaca 33445563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 32232368 - 32232445
Alignment:
Q  115 tggtggctaatgttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||| ||| ||| |||||  ||||||| ||||||||||||||||||| || ||||| | ||| ||||| |||||||    
T  32232368 tggtggttaaagtttgaacttcaaatcttatatatattatgcattgttcatatcaattaacctaagctcacgaggaca 32232445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 33555489 - 33555437
Alignment:
Q  126 gttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaacta 178  Q
    ||||| || |||||||||| |||||||||||||||| | |||||| |||||||    
T  33555489 gttcgtaccctaaatcttgaatatattatgcattgtccataccaactgaacta 33555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 44037379 - 44037411
Alignment:
Q  138 aatcttgtatatattatgcattgttcgtaccaa 170  Q
    |||||||||||||||||||||||||| ||||||    
T  44037379 aatcttgtatatattatgcattgttcataccaa 44037411  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 35308228 - 35308178
Alignment:
Q  142 ttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||||||||||||||||||| |||||| ||||||| ||||| |||||||    
T  35308228 ttgtatatattatgcattgttcataccaactgaactaagctcacgaggaca 35308178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 32998899 - 32998964
Alignment:
Q  126 gttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    ||||||||| |||| |||| || |||||| |||||||| ||||||||||| || ||||| ||||||    
T  32998899 gttcgaactgtaaaccttgcatgtattatacattgttcctaccaattgaaataagctcacgaggac 32998964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 27853401 - 27853349
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    ||||||||||||||||||||||||| |||||| |||  || ||||| ||||||    
T  27853401 atcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 50595896 - 50595952
Alignment:
Q  137 aaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacac 193  Q
    |||||||| |||| ||||||||||||| |||||||||| ||| ||||| || |||||    
T  50595896 aaatcttgcatattttatgcattgttcataccaattgagctaagctcacgatgacac 50595952  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 20175784 - 20175720
Alignment:
Q  126 gttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgagga 190  Q
    ||||||||||| ||||||||||||||||| |||||| | |||||| ||| ||| ||||| |||||    
T  20175784 gttcgaactctgaatcttgtatatattatacattgtccataccaactgagctaagctcacgagga 20175720  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 176064 - 176122
Alignment:
Q  115 tggtggctaatgttcgaactctaaatcttgtatatattatgcattgttcgtaccaattga 174  Q
    ||||||||| ||||||||| | |||| ||||||||||||||||||||  |||||||||||    
T  176064 tggtggctagtgttcgaaccc-aaatattgtatatattatgcattgtctgtaccaattga 176122  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 1642393 - 1642335
Alignment:
Q  126 gttcgaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctca 184  Q
    |||||||||| | |||||| |||||||||||||||||  |||||| ||| |||||||||    
T  1642393 gttcgaactccagatcttgcatatattatgcattgtttttaccaactgagctatgctca 1642335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 17627056 - 17627018
Alignment:
Q  146 atatattatgcattgttcgtaccaattgaactatgctca 184  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  17627056 atatattatacattgtccgtaccaattgaactatgctca 17627018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 41939280 - 41939330
Alignment:
Q  142 ttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||||||||||||||| ||| |||||||||| ||| ||||| |||||||    
T  41939280 ttgtatatattatgcattattcataccaattgagctaagctcacgaggaca 41939330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 1082236 - 1082284
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgagg 189  Q
    |||||||||||||| |||||| | |||||| ||||||| ||||||||||    
T  1082236 cttgtatatattatacattgtccctaccaactgaactaagctcatgagg 1082284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 12192508 - 12192560
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacac 193  Q
    |||| |||||||||||||||||| |||||||||||||| | | ||||||||||    
T  12192508 cttgcatatattatgcattgttcataccaattgaactaagtttatgaggacac 12192560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 28568252 - 28568216
Alignment:
Q  138 aatcttgtatatattatgcattgttcgtaccaattga 174  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28568252 aatcttgtatatattatgcattgttcataccaattga 28568216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 53468593 - 53468639
Alignment:
Q  146 atatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||| ||||||||||||| |||||||||| ||||||||| |||||||    
T  53468593 atattttatgcattgttcataccaattgagctatgctcacgaggaca 53468639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 9913946 - 9913893
Alignment:
Q  138 aatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||||||||||| ||||||||||||| |||||| ||| ||| ||||| ||||||    
T  9913946 aatcttgtatattttatgcattgttcataccaactgagctaagctcacgaggac 9913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 11949780 - 11949833
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacaca 194  Q
    |||| |||||||||||||||| | |||||| ||| ||| |||||||||||||||    
T  11949780 cttgcatatattatgcattgtccataccaactgagctaagctcatgaggacaca 11949833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 50774628 - 50774567
Alignment:
Q  130 gaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||| ||||||||||||||| ||||| ||||||  |||||||||| ||| ||||| ||||||    
T  50774628 gaaccctaaatcttgtatattttatgtattgtttataccaattgagctaagctcacgaggac 50774567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 22411803 - 22411759
Alignment:
Q  146 atatattatgcattgttcgtaccaattgaactatgctcatgagga 190  Q
    |||||||||||||||| | |||||| ||| |||||||||||||||    
T  22411803 atatattatgcattgtccataccaactgagctatgctcatgagga 22411759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 9111091 - 9111040
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||| |||||||||||||||||| |||||| ||||||| ||||| |||||||    
T  9111091 cttgcatatattatgcattgttcataccaactgaactaagctcacgaggaca 9111040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 7082998 - 7083059
Alignment:
Q  130 gaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||||| | |||||| |||||||||||||||| | |||||||||| ||| ||||| ||||||    
T  7082998 gaactccagatcttgcatatattatgcattgtccttaccaattgagctaagctcacgaggac 7083059  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 2753717 - 2753772
Alignment:
Q  137 aaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||||| |||||||||||||||| | ||| || ||||||||||||| |||||||    
T  2753717 aaatcttgcatatattatgcattgtccatactaactgaactatgctcaagaggaca 2753772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 7938768 - 7938725
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctca 184  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||    
T  7938768 cttgtatatattatgcattgttcataccaactgaactaagctca 7938725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 37364435 - 37364495
Alignment:
Q  130 gaactctaaatcttgtatatattatgcattgttcgtaccaattgaactatgctcatgagga 190  Q
    |||||| | ||||||||||| ||||||||||| | |||||||| | ||||||||| |||||    
T  37364435 gaactccagatcttgtatattttatgcattgtccataccaattaagctatgctcacgagga 37364495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Original strand, 47667955 - 47668005
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    ||||||||||||||||||||||  ||| || ||||||| ||||||||||||    
T  47667955 cttgtatatattatgcattgtttctacaaactgaactaagctcatgaggac 47668005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 34369525 - 34369472
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||| |||||||||||||||| | ||| || ||||||||||||| |||||||    
T  34369525 atcttgcatatattatgcattgtccatactaactgaactatgctcacgaggaca 34369472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 10461782 - 10461834
Alignment:
Q  142 ttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacaca 194  Q
    |||||||||||||||||||| | || ||||||||||| |||| ||| ||||||    
T  10461782 ttgtatatattatgcattgtccttatcaattgaactaagctcgtgatgacaca 10461834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 32896453 - 32896501
Alignment:
Q  113 tgtggtggctaatgttcgaactctaaatcttgtatatattatgcattgt 161  Q
    ||||||| || | |||||||| | |||||||||||||||||||||||||    
T  32896453 tgtggtgtctgaggttcgaaccccaaatcttgtatatattatgcattgt 32896501  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 11560542 - 11560492
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||| |||||||||||||||| | |||||||||| ||| ||||||||||||    
T  11560542 cttgcatatattatgcattgtccctaccaattgagctaagctcatgaggac 11560492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 9517024 - 9517077
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    ||||||||||||||||||||||||| |||||| ||| |||  |||| |||||||    
T  9517024 atcttgtatatattatgcattgttcataccaactgagctaatctcacgaggaca 9517077  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 11931651 - 11931598
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||| |||||||||||||||| | |||||||| ||||| ||||| |||||||    
T  11931651 atcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggaca 11931598  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 20455935 - 20455882
Alignment:
Q  141 cttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggacaca 194  Q
    |||| |||||||||||||||| | |||||||||| ||| ||||| |||||||||    
T  20455935 cttgcatatattatgcattgtccataccaattgagctaagctcacgaggacaca 20455882  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 32204590 - 32204537
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggaca 192  Q
    |||||| |||||||||||||||||| | |||||||| ||| ||||| |||||||    
T  32204590 atcttgcatatattatgcattgttcatgccaattgagctaagctcacgaggaca 32204537  T

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Target: scaffold0098 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 5471 - 5419
Alignment:
Q  139 atcttgtatatattatgcattgttcgtaccaattgaactatgctcatgaggac 191  Q
    |||||| |||||||||||||||||| |||||| ||| ||| ||||| ||||||    
T  5471 atcttggatatattatgcattgttcttaccaactgagctaagctcacgaggac 5419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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