View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_1 (Length: 967)
Name: NF9284_low_1
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_1 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 587 - 967
Target Start/End: Original strand, 2102304 - 2102682
Alignment:
| Q |
587 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcggcattgaaacaaataattccgctgaatataatggtctaattttg |
686 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2102304 |
aatgtagctaacactttatgtctctttataggtccatggcgtcagccaaggactcggcattcaaacaaataattccgctgaatataatggtctaattttg |
2102403 |
T |
|
| Q |
687 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagttccccttaatgtgtatgca |
786 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2102404 |
gggctgaaagaagctagcaaccaaggatatgagcatgttcatgtccgaggtgactctcagcttgtctgcaagcaggttagtt-cccttactgtgtatgca |
2102502 |
T |
|
| Q |
787 |
ctaacctaacttcatttattataactttatcacttaaattgtatctgaatgaattgaataatgataacattaaaagataatccgaatttaccatcatatt |
886 |
Q |
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||||||| |||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102503 |
ttaacctatcttcatgtattataac-ttatcacttaaattgcatctgaatgaattgaataatgataacattaaaagataatccgaatttaccatcatatt |
2102601 |
T |
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| Q |
887 |
tttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtgga |
967 |
Q |
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| T |
2102602 |
tttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtgga |
2102682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 2101494 - 2101806
Alignment:
| Q |
15 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttt |
114 |
Q |
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| T |
2101494 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgcaaatttggattatgtttcataagcttttaaaaaagttt |
2101593 |
T |
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| Q |
115 |
tgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatatga-ttttttataacctttatcatttttcattctcaattttaacc |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2101594 |
tgttttgtaattttcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttcattctcaattttaacc |
2101693 |
T |
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| Q |
214 |
ttgtagctttagttgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-taagtttttggtggtgt |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2101694 |
ttgtagctttagttgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtcttaagtttttggtggtgt |
2101792 |
T |
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| Q |
313 |
aaccagtgttatta |
326 |
Q |
| |
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|||||||||||||| |
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| T |
2101793 |
aaccagtgttatta |
2101806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 321 - 545
Target Start/End: Original strand, 2102059 - 2102306
Alignment:
| Q |
321 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggagttgcccgtcatgtttaactc-taaggtttat--- |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgatatcctctataaggcgttgcccatcatgtttaactcctaaggtttatatc |
2102158 |
T |
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| Q |
417 |
------------------ctatgaagtaa-cataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
497 |
Q |
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| T |
2102159 |
atgataactctattttatctatgaagtaaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaagg |
2102258 |
T |
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| Q |
498 |
tctggtgccggagctgttctccgttctgcagatgggagtcgggtgaat |
545 |
Q |
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| T |
2102259 |
tctggtgctggagctgttcttcgttctgcagatgggagtcgggtgaat |
2102306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 2106201 - 2106297
Alignment:
| Q |
441 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
537 |
Q |
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||||||| |||||| |||||||| |||||||| ||| ||||||| ||||| ||| |||||||||||||| | || ||||||| ||||||||||| |
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| T |
2106201 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagtgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2106297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 441 - 537
Target Start/End: Original strand, 2097714 - 2097810
Alignment:
| Q |
441 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatgggagtc |
537 |
Q |
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||||||| |||||| |||||||| |||||||| ||| |||| || ||||| ||| |||||||||||||| | || ||||||| ||||||||||| |
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| T |
2097714 |
ttgcagctttcttgtatccttgagtttgatggtgcagccagcgggaatcccggaccagctggtgccggagctatactgcgttctgaagatgggagtc |
2097810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 888 - 962
Target Start/End: Original strand, 2054369 - 2054443
Alignment:
| Q |
888 |
ttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggct |
962 |
Q |
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||||||| ||||||||||||| |||||| |||||| ||||||| | ||||| ||||| |||||||||||||| |
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| T |
2054369 |
ttattggttttgcaacagtttctgggttcatggaaaatcaacaaccagtatttatggaacttgtgcaatgaggct |
2054443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 2041741 - 2041794
Alignment:
| Q |
441 |
ttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctgga |
494 |
Q |
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| T |
2041741 |
ttgcagagttcttgtatccttcaatttgatggtgcgtcaagtggaaatcctgga |
2041794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 435 - 771
Target Start/End: Complemental strand, 39183883 - 39183543
Alignment:
| Q |
435 |
aaaatcttgcagcgttcttgcatccttgaatttgatggagcatccagtggaaatcctggaaggtctggtgccggagctgttctccgttctgcagatggga |
534 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
39183883 |
aaaatcttgcagcgttcttgtatcctagaatttgatggagcatccagtggaaatcctggaaggtctggtgcaggagctgttctgcgttctgcagatggga |
39183784 |
T |
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| Q |
535 |
gtcgggtgaatactctatccatcaaatcatttttgcattatacaatatatcaaa------tgtagccaacactttatgtctctttataggtccatggagt |
628 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| | |||||||| |||||||||||||||||||| || |
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| T |
39183783 |
gtcgggtgaatactctatccatcaaatcatttttgcactatacaatatgtcaaagtcaaatgtacctaacacttt--gtctctttataggtccatggcgt |
39183686 |
T |
|
| Q |
629 |
cagccaaggactcggcattgaaacaaataattccgctgaatataatggtctaattttggggctgaaagaagctagcaaccaaggatatgagcatgttcat |
728 |
Q |
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||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
39183685 |
cagccaaggactcggcactcaaacaaataattctgctgaatataatggtctaattttggggctgaatgaagctaggaaccaaggatatgagcatgttcat |
39183586 |
T |
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| Q |
729 |
gtccgaggtgactctcagcttgtctgcaagcaggttagttccc |
771 |
Q |
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| T |
39183585 |
gtccgaggtgactctcagcttgtttgcaagcaggttagttccc |
39183543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 39185054 - 39184928
Alignment:
| Q |
44 |
ttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattttcacgttttcatgagc |
143 |
Q |
| |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39185054 |
ttatcaatggttaggatctgtttggcaaaccgcaaatttggattatgttttataagcttttaaaagagttttgttttgtaattttcacgttttcaagagc |
39184955 |
T |
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| Q |
144 |
ttatagtttatatttaccggcttatat |
170 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
39184954 |
ttatagtttatatttaccggcttatat |
39184928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 885 - 967
Target Start/End: Complemental strand, 39183087 - 39183005
Alignment:
| Q |
885 |
tttttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtgga |
967 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
39183087 |
tttttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggaacctttgtaatgaggctgtgga |
39183005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
186 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
230 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 287 - 326
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
287 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
326 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 4952228 - 4952169
Alignment:
| Q |
412 |
tttatctatgaagtaacataaacaaaatcttgcagcgttcttgcatccttgaatttgatg |
471 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4952228 |
tttatttatgagataacataaacaaaatcttgcagcgttcttgtatccttgaatttgatg |
4952169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 587 - 659
Target Start/End: Complemental strand, 4952165 - 4952093
Alignment:
| Q |
587 |
aatgtagccaacactttatgtctctttataggtccatggagtcagccaaggactcggcattgaaacaaataat |
659 |
Q |
| |
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|||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| | |||||| |||| |
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| T |
4952165 |
aatgtagctaactctttatatctctttataggtccatggcatcagccaaggactcggcactaaaacaagtaat |
4952093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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