View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_10 (Length: 684)
Name: NF9284_low_10
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 279 - 666
Target Start/End: Original strand, 39995491 - 39995891
Alignment:
| Q |
279 |
tattggtttcttcataccaacctcgatatagtaaattattcccatatccatattttgtataagttccatat---------------ttataaattctaga |
363 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
39995491 |
tattggtttcttcataccaacctcaatagagtaaattattcccat--ccttattttgtataagttccataaataaaaagtacttacttataaattctaga |
39995588 |
T |
|
| Q |
364 |
agtcatcaaaacttttcttttgttgttgcatgtgtgattctctttcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaaggcatcc |
463 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39995589 |
agtcatcaaaacttatcttttgttgttgcatgtgtgattctctttcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaagacatcc |
39995688 |
T |
|
| Q |
464 |
atatggatctcttgcagacaaataataaccaacaaagaaccatcatcattgggactaggaagaagcaatgaatctccatcaagttcttcatgtgttccta |
563 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39995689 |
atatggatctcttgtagacaaataataaccaacaaagaaccatcatcattgggactaggaagaagcaatgaatctccatcaagttcttcatgtgttccta |
39995788 |
T |
|
| Q |
564 |
gccccatataaacctccttcccccacccaaaatcaagtccataaattggcaatgacaaccaactagtcactcctaaattaggattccaataaaaaggccc |
663 |
Q |
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| T |
39995789 |
gccccatataaacctcctttccccacccaaaatcaagtccataaattggcaatgacaaccaactagtcactcctaaattaggattccaataaaaaggccc |
39995888 |
T |
|
| Q |
664 |
ctt |
666 |
Q |
| |
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||| |
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| T |
39995889 |
ctt |
39995891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 408 - 663
Target Start/End: Complemental strand, 53037959 - 53037707
Alignment:
| Q |
408 |
tcaatccatccatggatcacacaatgtcttgataaaaatgcttcttaaaggcatccatatggatctcttgcagacaaataataaccaacaaagaaccatc |
507 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| | |||||||| ||||||| |||||||||||| ||||| |
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| T |
53037959 |
tcaatacatccatggatcacacaatgtcttgataaaaatgcctcttgaatgcatccatatgaacctcttgcaaacaaatagcaaccaacaaagatccatc |
53037860 |
T |
|
| Q |
508 |
atcattgggactaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctccttcccccacccaaaatcaagtccataa |
607 |
Q |
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| T |
53037859 |
atcatcataactaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataa |
53037763 |
T |
|
| Q |
608 |
attggcaatgacaaccaactagtcactcctaaattaggattccaataaaaaggccc |
663 |
Q |
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| T |
53037762 |
attggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccc |
53037707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 128 - 283
Target Start/End: Original strand, 39994915 - 39995068
Alignment:
| Q |
128 |
attgcagataagaaggaggaggtggaagaatcatattgaaggatgagttgttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttc |
227 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
39994915 |
attgcagataagaaggaggaggtagatgaatcatattgaaggatgagttgttggaatatagatgaagc-aaaatatgcatcctaagattaac-aaggttc |
39995012 |
T |
|
| Q |
228 |
ataatattacaagaggaaaaacaagattgcaatacatgattaagaaattaatattg |
283 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39995013 |
ataatattacaagaggaaaaacaagattgcattacatgattaagaaattaatattg |
39995068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 40009164 - 40009225
Alignment:
| Q |
178 |
ttggaatatagatgaagcaaaaatatgcatcctaagattaacaaaggttcataatattacaag |
240 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
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| T |
40009164 |
ttggaatatagatgaagcaaaagtatgcatcctaagattaac-aaggtccataatattacaag |
40009225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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