View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9284_low_13 (Length: 650)
Name: NF9284_low_13
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_13 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Complemental strand, 463857 - 463224
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
463857 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
463758 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
463757 |
tttttgtctta-gagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
463659 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
463658 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
463559 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
463558 |
acccgattcacatataggactagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacattcaaggat |
463459 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
463458 |
ctcgtgaattccgcgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgccagctgata |
463359 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
463358 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
463259 |
T |
|
| Q |
600 |
tagctttacacatatatgcttccttccatccttgt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
463258 |
tagctttacacatatatgcttccttccatccttgt |
463224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 35899063 - 35899696
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
35899063 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
35899162 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35899163 |
tttttgtctta-gagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
35899261 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899262 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
35899361 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899362 |
acccgattcacatataggactagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacattcaaggat |
35899461 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35899462 |
ctcgtgaattccgcgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgccagctgata |
35899561 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899562 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
35899661 |
T |
|
| Q |
600 |
tagctttacacatatatgcttccttccatccttgt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35899662 |
tagctttacacatatatgcttccttccatccttgt |
35899696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 112 - 544
Target Start/End: Complemental strand, 34673784 - 34673352
Alignment:
| Q |
112 |
agagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaataatctacaacc |
211 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
34673784 |
agagttttcaaaccaataacaacatcgacgtctacaatcatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacaacc |
34673685 |
T |
|
| Q |
212 |
cttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctatacccgattcac |
311 |
Q |
| |
|
| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||| |
|
|
| T |
34673684 |
cgtttggcatccatctcaaaatcgacgttagtgagttgcagctcatgtacccattggatagcatatgacaggcccaaagcttcacctatacttgaatcac |
34673585 |
T |
|
| Q |
312 |
atataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggatctcgagaattc |
411 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||||| ||| ||||| || |||||||| ||||||||| | |
|
|
| T |
34673584 |
atataggactagaccgtagcgtctttgctgccacaaactgtccagcttcgtcccttatacacataccaaatccaattacgttcaaggaactcgagaatgc |
34673485 |
T |
|
| Q |
412 |
cgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgatatagtgctgaca |
510 |
Q |
| |
|
|| || |||||||||||||||||| || |||||||||| ||||| |||||||| | || || | ||| || ||| |||||| |||| ||||||||| |
|
|
| T |
34673484 |
agcatcgacattacacttaagccttcccctgcctggtttttgcca-ttgatgtgccgttgatgcgctgaactgttgctgccagcggatacggtgctgaca |
34673386 |
T |
|
| Q |
511 |
gcatgcatagcaggctgctgttcgccctctccca |
544 |
Q |
| |
|
|| || || ||| ||| |||||||| ||||||| |
|
|
| T |
34673385 |
acacgcgtaacagactgttgttcgccttctccca |
34673352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 34673332 - 34673264
Alignment:
| Q |
492 |
agctgatatagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgct |
560 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
34673332 |
agctgatacagtgttgacagcacgcatagcaggctgctgttcgccctctctcatggctgaactactgct |
34673264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 34673244 - 34673188
Alignment:
| Q |
578 |
tgttgttcgccctcccccagcctagctttacacatatatgcttccttccatccttgt |
634 |
Q |
| |
|
||||||||||||||||||| || ||| || || | || ||||||||||||||||||| |
|
|
| T |
34673244 |
tgttgttcgccctcccccaaccgagccttgcataaatttgcttccttccatccttgt |
34673188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Complemental strand, 52053265 - 52052632
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
52053265 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
52053166 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52053165 |
tttttgtctta-gagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
52053067 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52053066 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
52052967 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52052966 |
acccgattcacatataggaccagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacattcaaggat |
52052867 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52052866 |
ctcgtgaattccacgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgccagctgata |
52052767 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52052766 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
52052667 |
T |
|
| Q |
600 |
tagctttacacatatatgcttccttccatccttgt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52052666 |
tagctttacacatatatgcttccttccatccttgt |
52052632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 294 - 623
Target Start/End: Complemental strand, 53572485 - 53572155
Alignment:
| Q |
294 |
cacctatacccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacatt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53572485 |
cacctatacccgattcacatataggactagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacatt |
53572386 |
T |
|
| Q |
394 |
caaggatctcgagaattccgcgtcaacattacacttaagccttcc-gtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgcca |
492 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53572385 |
caaggatctcgtgaattccgcgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgcca |
53572286 |
T |
|
| Q |
493 |
gctgatatagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcc |
592 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53572285 |
gctgatatggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcc |
53572186 |
T |
|
| Q |
593 |
cccagcctagctttacacatatatgcttcct |
623 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
53572185 |
cccagcctagctttacacatatatgcttcct |
53572155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 53572877 - 53572586
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
53572877 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
53572778 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53572777 |
tttttgtctta-gagttttcaaaccaataacaacataaacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
53572679 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagctt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53572678 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagctt |
53572586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 301
Target Start/End: Original strand, 25422230 - 25422332
Alignment:
| Q |
198 |
aataatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacc |
297 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| || ||||| || | |||||| || ||||| ||||| |||||||| | ||| || |||||||||||||| |
|
|
| T |
25422230 |
aatagtctacaaccctcttggcatccaactcgaaatcgactttgg-gagttgtagatcatgaacccactggatagcttgtgacagacccaaagcttcacc |
25422328 |
T |
|
| Q |
298 |
tata |
301 |
Q |
| |
|
|||| |
|
|
| T |
25422329 |
tata |
25422332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 31356603 - 31357236
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
31356603 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
31356702 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31356703 |
tttttgtctta-gagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
31356801 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31356802 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
31356901 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31356902 |
acccgattcacatataggaccagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacattcaaggat |
31357001 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31357002 |
ctcgtgaattccacgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgccagctgata |
31357101 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31357102 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
31357201 |
T |
|
| Q |
600 |
tagctttacacatatatgcttccttccatccttgt |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31357202 |
tagctttacacatatatgcttccttccatccttgt |
31357236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 16993892 - 16994521
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
16993892 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttatataattaacatataggtggcccttacgcagctc |
16993991 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16993992 |
tttttgtctta-gagttttcaaaccaataacaacatcgacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
16994090 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16994091 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagtgtatgagaggcccaaagcttcacctat |
16994190 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16994191 |
acccgattcacatataggactagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatataaacaccaataacattcaaggat |
16994290 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
16994291 |
ctcgagaattccgcgtcaacattacacttaagccttcccgtgcctggtttctgctacctgatgtgctgctgctgtgtggaattgctgctgccagctgata |
16994390 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16994391 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgacacggtgttgttcgccctcccccagcc |
16994490 |
T |
|
| Q |
600 |
tagctttacacatatatgcttccttccatcc |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16994491 |
tagctttacacatatatgcttccttccatcc |
16994521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 193 - 438
Target Start/End: Complemental strand, 15333298 - 15333060
Alignment:
| Q |
193 |
attgtaataatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| || ||| |||||||||| |||| ||||| ||||| ||||| | |||||| ||||||||| |
|
|
| T |
15333298 |
attgtaataatctacaacccttttggcagc----tcaaaatcaacaatagtgagttgtagcttatgtatccattagatagtatttgagagacccaaagct |
15333203 |
T |
|
| Q |
293 |
tcacctatacccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacat |
392 |
Q |
| |
|
||||||||| || ||||| | ||||||||| | | |||||| ||||||||||||||||||||||||||||| ||| |||| |||| |||||||||| |
|
|
| T |
15333202 |
tcacctatattcggatcacaca--ggactagaccgcaacgtctttgctgccacaaactgtccaacttcgtccctcatacacatttcaaatccaataacat |
15333105 |
T |
|
| Q |
393 |
tcaaggatctcgagaattccgcgtcaacattacacttaagccttcc |
438 |
Q |
| |
|
||||||| ||||| || || ||| ||||||||||||||||||| |
|
|
| T |
15333104 |
tcaaggaactcga-aaagccacgtaggcattacacttaagccttcc |
15333060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 15333407 - 15333315
Alignment:
| Q |
141 |
gtctacaatcatcaatggttg--cgctgaattcggatatatcattgcttaccttattgtaataatctacaacccttttggcatccatctcaaa |
231 |
Q |
| |
|
||||||||||||||| | ||| ||| ||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
15333407 |
gtctacaatcatcaacgattgggcgccgaattcgaaaatatcattgcttctcttattgtaataatctacaatccttttggcatccaactcaaa |
15333315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 19477290 - 19477194
Alignment:
| Q |
198 |
aataatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttc |
294 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| || |||||| |||||||||| ||||| ||||| |||| |||||||| || ||||||||||| |
|
|
| T |
19477290 |
aataatctacaaccgtcttggcatccaattcaaaatcaacattattgagttgcagttcatgcacccaacggatggcgtatgaaagtcccaaagcttc |
19477194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 30092117 - 30092211
Alignment:
| Q |
200 |
taatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttc |
294 |
Q |
| |
|
|||||||||||| |||| ||||| | |||||| || ||||| || ||||| || ||||| |||||| ||||||| | |||||| |||| |||||| |
|
|
| T |
30092117 |
taatctacaaccttttttgcatcgaactcaaaatccacatttgtaagttgtagttcatgcacccatcggatagcatgtgagagtcccagagcttc |
30092211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 30198022 - 30197400
Alignment:
| Q |
1 |
ttttttcgatgtgaattatgaggaagaggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatacaggtggcccttatgcagctc |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
30198022 |
ttttttctatgtgaattatgaggaaggggtatgcgttcttttgttatacgggagcagctgtttttgtataattaacatataggtggcccttacgcagctc |
30197923 |
T |
|
| Q |
101 |
tttttgtcttaagagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30197922 |
tttttgtctta-gagttttcaaaccaataacaacataaacgtctacaatcatcaatggttgcgctgaattcagatatatcattgcttaccttattgtaat |
30197824 |
T |
|
| Q |
201 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30197823 |
aatctacaacccttttggcatccatctcaaagtcgacattagtgagtttcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctat |
30197724 |
T |
|
| Q |
301 |
acccgattcacatataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30197723 |
acccgattcacatataggactagaccgtagcgtcttggctgccacaaactgtccagcttcgtcccttataaacatatcaacaccaataacattcaaggat |
30197624 |
T |
|
| Q |
401 |
ctcgagaattccgcgtcaacattacacttaagcctt-ccgtgcctggtttctgccacctgatgtgctgctgttgtgtggaattgctgccgccagctgata |
499 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30197623 |
ctcgtgaattccgcgtcaacattacacttaagccttcccgtgcctggtttctgccacctgatgtgctgctgctgtgtggaattgctgccgccagctgata |
30197524 |
T |
|
| Q |
500 |
tagtgctgacagcatgcatagcaggctgctgttcgccctctcccagcgctgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
599 |
Q |
| |
|
| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30197523 |
tggtgctgacagcacgcatagcaggttgctgttcgccctctcccagcactgaactgctgctcctgtcggctgatacggtgttgttcgccctcccccagcc |
30197424 |
T |
|
| Q |
600 |
tagctttacacatatatgcttcct |
623 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30197423 |
tagctttacacatatatgcttcct |
30197400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 112 - 437
Target Start/End: Original strand, 11524146 - 11524471
Alignment:
| Q |
112 |
agagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaataatctacaacc |
211 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||||||||||| |||||| ||||| ||||||||||||||| | ||| |||||||||||||| || |
|
|
| T |
11524146 |
agagttttcaaaccaagaacaacatcgacgtctacaatcatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataatctacagcc |
11524245 |
T |
|
| Q |
212 |
cttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctatacccgattcac |
311 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||||||||||||||||||| || |||| |
|
|
| T |
11524246 |
cgtttggcatccatctcaaaatcgacattagtgagttgcagctcatgtacccactgaatagcatatgacagacccaaagcttcacctatacttgaatcac |
11524345 |
T |
|
| Q |
312 |
atataggactagactgtagcgtcttggctgccacaaactgtccaacttcgtcccttataaacatatcaacaccaataacattcaaggatctcgagaattc |
411 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||| | |
|
|
| T |
11524346 |
atataggactagaccgtagcgtctttgctgccacaaactgtccaacttcgtcccttatacacataccaaatccaataacattcaaggaactcgagaatgc |
11524445 |
T |
|
| Q |
412 |
cgcgtcaacattacacttaagccttc |
437 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
11524446 |
agcgtcgagattacacttaagccttc |
11524471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 112 - 325
Target Start/End: Original strand, 20463635 - 20463848
Alignment:
| Q |
112 |
agagttttcaaaccaataacaacatccaagtctacaatcatcaatggttgcgctgaattcggatatatcattgcttaccttattgtaataatctacaacc |
211 |
Q |
| |
|
|||||||||||||||| ||||||| | | |||||||||| |||||| ||| || ||||| ||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
20463635 |
agagttttcaaaccaagaacaacaccgacgtctacaatcctcaatgattgtgccaaattcagatatatcattgcttcctttaatgtaataatctacaacc |
20463734 |
T |
|
| Q |
212 |
cttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcacctatacccgattcac |
311 |
Q |
| |
|
| |||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||| |
|
|
| T |
20463735 |
cgtttggcatccatctcaaaatcaacattagtgagttgcagctcatgtacccactggatagcatatgacagacccaaagcttcacctatacttgaatcac |
20463834 |
T |
|
| Q |
312 |
atataggactagac |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20463835 |
atataggactagac |
20463848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 25938957 - 25938861
Alignment:
| Q |
198 |
aataatctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttc |
294 |
Q |
| |
|
||||||||||||| | |||||||||| ||||| || ||||| || ||| | || |||||||||||||||||||| | |||||| |||| |||||| |
|
|
| T |
25938957 |
aataatctacaactttcttggcatccaattcaaaatccacatttgttagtagtagttcatgtacccattggatagcatgtgagagtcccatagcttc |
25938861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 26622577 - 26622481
Alignment:
| Q |
203 |
tctacaacccttttggcatccatctcaaagtcgacattagtgagttgcagctcatgtacccattggatagcgtatgagaggcccaaagcttcaccta |
299 |
Q |
| |
|
|||||||| || ||||| |||| ||| || |||||||| | |||||| |||||||| ||||| |||||||| | ||| | ||| |||||||||||| |
|
|
| T |
26622577 |
tctacaactctcttggcttccaactcgaaatcgacatttgggagttgtagctcatgaacccactggatagcttgtgacaaaccctaagcttcaccta |
26622481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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