View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9284_low_16 (Length: 633)

Name: NF9284_low_16
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9284_low_16
NF9284_low_16
[»] chr4 (26 HSPs)
chr4 (43-616)||(16844311-16844893)
chr4 (417-610)||(24219052-24219242)
chr4 (43-109)||(37777459-37777525)
chr4 (43-97)||(24969254-24969308)
chr4 (43-106)||(40089328-40089390)
chr4 (50-111)||(2790981-2791042)
chr4 (61-112)||(35780574-35780625)
chr4 (43-109)||(19498313-19498379)
chr4 (43-97)||(32128404-32128458)
chr4 (43-109)||(34027388-34027454)
chr4 (43-93)||(38352489-38352539)
chr4 (43-97)||(54083478-54083532)
chr4 (43-97)||(10431442-10431496)
chr4 (43-109)||(16882627-16882693)
chr4 (43-97)||(37514570-37514624)
chr4 (43-97)||(45560704-45560758)
chr4 (44-97)||(55255092-55255145)
chr4 (43-95)||(1105445-1105497)
chr4 (61-109)||(54779441-54779489)
chr4 (61-92)||(35463958-35463989)
chr4 (43-97)||(5128983-5129037)
chr4 (43-97)||(17679229-17679283)
chr4 (43-97)||(47127993-47128047)
chr4 (43-97)||(48208462-48208516)
chr4 (44-93)||(38209842-38209891)
chr4 (61-109)||(3850595-3850643)
[»] chr5 (37 HSPs)
chr5 (364-616)||(37638340-37638591)
chr5 (364-616)||(37710101-37710352)
chr5 (364-616)||(37822498-37822749)
chr5 (405-616)||(37394201-37394412)
chr5 (454-616)||(37434393-37434555)
chr5 (409-616)||(37531738-37531945)
chr5 (409-616)||(37695233-37695440)
chr5 (504-613)||(37701422-37701531)
chr5 (409-616)||(37402313-37402520)
chr5 (409-616)||(37592842-37593049)
chr5 (510-615)||(37439809-37439914)
chr5 (177-317)||(37709922-37710056)
chr5 (177-284)||(37531424-37531529)
chr5 (177-284)||(37592631-37592736)
chr5 (177-284)||(37694990-37695095)
chr5 (222-317)||(37394481-37394576)
chr5 (43-110)||(38869593-38869660)
chr5 (43-97)||(16199026-16199080)
chr5 (524-617)||(37427803-37427896)
chr5 (43-111)||(16799556-16799624)
chr5 (177-273)||(37822032-37822126)
chr5 (43-97)||(27923897-27923951)
chr5 (43-90)||(9364113-9364160)
chr5 (241-311)||(37402566-37402636)
chr5 (43-109)||(40389765-40389831)
chr5 (43-97)||(15480229-15480283)
chr5 (43-97)||(19523105-19523159)
chr5 (44-97)||(34756615-34756668)
chr5 (49-93)||(7670743-7670787)
chr5 (62-106)||(28822576-28822620)
chr5 (43-95)||(30853280-30853332)
chr5 (43-97)||(16592845-16592899)
chr5 (43-97)||(31881590-31881644)
chr5 (43-97)||(36188019-36188073)
chr5 (255-284)||(37531565-37531594)
chr5 (46-94)||(22987470-22987518)
chr5 (564-616)||(37383641-37383693)
[»] chr3 (22 HSPs)
chr3 (43-110)||(44708281-44708348)
chr3 (198-293)||(14552511-14552606)
chr3 (46-109)||(48156942-48157005)
chr3 (43-114)||(53507117-53507188)
chr3 (43-112)||(43207474-43207543)
chr3 (43-110)||(9878919-9878986)
chr3 (43-97)||(50939468-50939522)
chr3 (43-97)||(34290874-34290928)
chr3 (43-97)||(54407391-54407445)
chr3 (43-97)||(50258734-50258788)
chr3 (44-97)||(27078819-27078872)
chr3 (44-97)||(27084616-27084669)
chr3 (44-97)||(36716276-36716329)
chr3 (44-97)||(38681348-38681401)
chr3 (43-92)||(48720530-48720579)
chr3 (44-97)||(54619454-54619507)
chr3 (43-97)||(3954852-3954906)
chr3 (43-97)||(13795199-13795253)
chr3 (63-112)||(11467754-11467803)
chr3 (61-98)||(25373642-25373679)
chr3 (44-93)||(36605862-36605911)
chr3 (43-95)||(53149457-53149509)
[»] chr6 (14 HSPs)
chr6 (43-112)||(17353756-17353825)
chr6 (43-111)||(20711952-20712020)
chr6 (43-110)||(28075587-28075654)
chr6 (43-109)||(19986966-19987032)
chr6 (43-97)||(27788922-27788976)
chr6 (50-112)||(235466-235528)
chr6 (43-97)||(23070889-23070943)
chr6 (44-97)||(13727650-13727703)
chr6 (43-97)||(12083640-12083694)
chr6 (43-97)||(19741223-19741277)
chr6 (43-93)||(30832667-30832717)
chr6 (56-97)||(21280345-21280386)
chr6 (44-97)||(21479296-21479349)
chr6 (56-97)||(27314777-27314818)
[»] chr7 (14 HSPs)
chr7 (43-109)||(47985202-47985268)
chr7 (43-110)||(38415108-38415175)
chr7 (43-97)||(48984077-48984131)
chr7 (43-97)||(24525918-24525972)
chr7 (43-108)||(25010254-25010319)
chr7 (43-110)||(19691896-19691964)
chr7 (43-94)||(20091514-20091565)
chr7 (43-97)||(23551305-23551359)
chr7 (43-97)||(28749593-28749647)
chr7 (43-110)||(10329643-10329710)
chr7 (43-97)||(12596429-12596483)
chr7 (61-111)||(26253067-26253117)
chr7 (44-97)||(18777019-18777072)
chr7 (65-109)||(223552-223596)
[»] chr2 (14 HSPs)
chr2 (43-109)||(26715931-26715997)
chr2 (43-97)||(9045844-9045898)
chr2 (43-97)||(27506975-27507029)
chr2 (43-95)||(24410250-24410302)
chr2 (43-97)||(10762799-10762853)
chr2 (44-97)||(4505691-4505744)
chr2 (43-88)||(8327488-8327533)
chr2 (43-97)||(3952911-3952965)
chr2 (44-97)||(3155015-3155068)
chr2 (44-97)||(6964804-6964857)
chr2 (43-97)||(7162689-7162743)
chr2 (43-97)||(12337689-12337743)
chr2 (44-97)||(34693159-34693212)
chr2 (44-97)||(34715571-34715624)
[»] chr8 (12 HSPs)
chr8 (43-111)||(42600582-42600650)
chr8 (47-97)||(10917206-10917256)
chr8 (43-97)||(23606855-23606909)
chr8 (43-112)||(23798495-23798564)
chr8 (43-97)||(20003876-20003930)
chr8 (44-97)||(2952473-2952526)
chr8 (44-97)||(3048774-3048827)
chr8 (44-97)||(5860996-5861049)
chr8 (61-111)||(45193876-45193926)
chr8 (43-97)||(45472203-45472257)
chr8 (44-97)||(30883122-30883175)
chr8 (60-104)||(4322502-4322546)
[»] chr1 (21 HSPs)
chr1 (43-110)||(9173255-9173322)
chr1 (43-110)||(27559446-27559513)
chr1 (43-97)||(1367111-1367165)
chr1 (43-97)||(13913716-13913770)
chr1 (43-97)||(40502024-40502078)
chr1 (47-110)||(44895466-44895529)
chr1 (44-111)||(51607674-51607741)
chr1 (43-93)||(19955547-19955597)
chr1 (43-97)||(14146217-14146271)
chr1 (43-97)||(17168781-17168835)
chr1 (43-97)||(23181723-23181777)
chr1 (44-97)||(27906949-27907002)
chr1 (44-97)||(44655551-44655604)
chr1 (61-97)||(5027992-5028028)
chr1 (43-97)||(3406335-3406389)
chr1 (43-97)||(3440431-3440485)
chr1 (43-97)||(6771708-6771762)
chr1 (43-97)||(6888481-6888535)
chr1 (43-97)||(10912094-10912148)
chr1 (61-111)||(12037587-12037637)
chr1 (43-97)||(41697279-41697333)
[»] scaffold0039 (1 HSPs)
scaffold0039 (43-109)||(106379-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (43-111)||(4147-4215)
[»] scaffold0070 (1 HSPs)
scaffold0070 (43-97)||(1023-1077)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 43 - 616
Target Start/End: Complemental strand, 16844893 - 16844311
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgattctcgatttacctaaatgtgggctacctacc 142  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16844893 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatcctcgatttacctaaatgtgggctacctacc 16844794  T
Q  143 aaccaggagacattgagatnnnnnnnnngttcaaaagttgaagcaattaagtcttgatcatttattcaacnnnnnnn-tcttgaaagtaaccaaaaagca 241  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  16844793 aaccaggagacattgagataaaaaaaaagttcaaaagttgaagcaattaagtcttgatcatttattcaacaaaaaaaatcttgaaagtaaccaaaaagca 16844694  T
Q  242 attgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatatactacatccct------gagaaatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  16844693 attgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatatactacatcccttaaactgagaaatt 16844594  T
Q  336 -agattaattacaaacagnnnnnnn-gacaagattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcg 433  Q
     |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  16844593 cagattaattacaaacagttttttttgacaagattaattacaaacagttgtatctacatatttgaaaaaaaccctcatccaattaattcattcttcggcg 16844494  T
Q  434 atttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaataca 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16844493 atttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcaaggcattggggttttccagtgaagaagaataca 16844394  T
Q  534 ttatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16844393 ttatatcccaagagcaacccgaatattgcaccacatgcatatccgattgttaccgctttccagccaaatcctgattcttcttc 16844311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 610
Target Start/End: Complemental strand, 24219242 - 24219052
Alignment:
Q  417 taattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttc 516  Q
    ||||||||||||| |||||||||     || | ||| |||| ||||||||||||||| |||| || | ||||||||||||||| || ||||| ||||| |    
T  24219242 taattcattcttctgcgatttgcaccaactttcttgtttgtccttttcaatcttatgctaaatatgctttcaacatgtcttgcaagccattgaggtttcc 24219143  T
Q  517 cagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgattc 610  Q
    |||||||||| |   || ||||||| || || |  || | || |||||||||| ||||||| |||||||| ||||||||||||||||| |||||    
T  24219142 cagtgaagaaca---cactatatcccaagaggattccaagtactgccccacatccatatcctattgctactgctttccagccaaatcccgattc 24219052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 37777459 - 37777525
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  37777459 ttgaggcccatgattgagggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctg 37777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 24969308 - 24969254
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  24969308 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 24969254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 40089390 - 40089328
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggc 106  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  40089390 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcatggccgggc 40089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 2790981 - 2791042
Alignment:
Q  50 ccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  2790981 ccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgat 2791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 35780574 - 35780625
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  35780574 ggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctgatt 35780625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 19498379 - 19498313
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||||||  ||||||||||| |||||||||| |||||||||| |||  ||||||||||    
T  19498379 ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 32128458 - 32128404
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| |||| | ||| |||||||||||||||||||||||||||||||||||||    
T  32128458 ttgaggtccataactgagggaggcccagctctgttgagctgtttgcaccccctca 32128404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 34027454 - 34027388
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| ||| |||| |||||||||||||||| |||||||| |||||| |||| ||||||    
T  34027454 ttgaggcccatgactgagggagacccagctctgttgagcagtttgcactccctcagagccaggcctg 34027388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 38352489 - 38352539
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 38352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 54083478 - 54083532
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||    
T  54083478 ttgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctca 54083532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10431442 - 10431496
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  10431442 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 10431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 16882627 - 16882693
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||| ||||| | | ||| ||||||||||||||||||||||||||| ||||| | |||||||||    
T  16882627 ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacctcctcagaaccgggcctg 16882693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 37514624 - 37514570
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  ||| ||||||||||||||  ||||||||||||||||||||||    
T  37514624 ttgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccctca 37514570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 45560704 - 45560758
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctca 45560758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 55255145 - 55255092
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 55255092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 1105497 - 1105445
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||    
T  1105497 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 1105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 54779489 - 54779441
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  54779489 ggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 35463989 - 35463958
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccc 92  Q
    ||||||||||||||||||||||||||||||||    
T  35463989 ggaggcccagctctgttgagctgtttgcaccc 35463958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 5128983 - 5129037
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||| ||  |||| |||||||||||||  ||||||||||||||||||||||    
T  5128983 ttgaggcctatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 5129037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 17679283 - 17679229
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||| ||||||  ||||||||||||||||||||||    
T  17679283 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctca 17679229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 47128047 - 47127993
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||| ||||||||||||||||||    
T  47128047 ttgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctca 47127993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 48208516 - 48208462
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  48208516 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 48208462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 38209842 - 38209891
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38209891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 3850643 - 3850595
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| ||  |||||||||||||||||||| ||||| ||||    
T  3850643 ggaggcccagctcagtatagctgtttgcaccccctcatggccggccctg 3850595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 364 - 616
Target Start/End: Original strand, 37638340 - 37638591
Alignment:
Q  364 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 463  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||| |||||||||| | ||||||||| | ||||||||    
T  37638340 agattaattacaaacagttgtaactacatatttgaaaaga-ccctcatccaattaattcattcttctgcgatttgcgatggctctgttgttcgttctttt 37638438  T
Q  464 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgcc 563  Q
    ||||||||||| ||||||| |||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  37638439 caatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatcccaatagcaacccgaatattgcc 37638538  T
Q  564 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37638539 ccacatgcatatccgattgctaccgctttccagccaaatccggattcttcttc 37638591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 364 - 616
Target Start/End: Original strand, 37710101 - 37710352
Alignment:
Q  364 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 463  Q
    ||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||    
T  37710101 agattaattacaaacagttatatctacatatttgaaaaca-ccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttctttt 37710199  T
Q  464 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgcc 563  Q
    ||||||||||| ||||||| |||||||||||||| | || |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  37710200 caatcttatgtcaaacatatgttcaacatgtcttacaagccattcgggtttaccggtgaagaagaatacattatatccgaatagcaacccgaatattgcc 37710299  T
Q  564 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37710300 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 37710352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 364 - 616
Target Start/End: Original strand, 37822498 - 37822749
Alignment:
Q  364 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 463  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||  |||||||||| | ||||||||| | ||||||||    
T  37822498 agattaattacaaacagttgtaactacatatttgaaaaga-ccctcatccaattaattcattcttatgcgatttgcgatggctctgttgttcgttctttt 37822596  T
Q  464 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgcc 563  Q
    ||||||||||| ||||||| |||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37822597 caatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatatccgaatagcaacccgaagattgcc 37822696  T
Q  564 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37822697 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 37822749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 405 - 616
Target Start/End: Complemental strand, 37394412 - 37394201
Alignment:
Q  405 ccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggc 504  Q
    |||||||| ||||||||||| ||||  ||||||  | | ||||| ||| ||| |||||||||||||||||||||||||  ||||||||||||||| || |    
T  37394412 ccctcatcaaattaattcatccttctacgatttaagttggctctattgtttgatcttttcaatcttatgttaaacatattttcaacatgtcttgcaagcc 37394313  T
Q  505 attggggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcc 604  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37394312 attggggttttccagtgaagaagaatacattatatcccaacagcaacccatatattgccccacatccatatccgattgctaccgctttccagccaaatcc 37394213  T
Q  605 tgattcttcttc 616  Q
    ||||||||||||    
T  37394212 tgattcttcttc 37394201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 454 - 616
Target Start/End: Original strand, 37434393 - 37434555
Alignment:
Q  454 ttgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatatccgaatagcaaccc 553  Q
    |||||||||||| ||||||||||||| || | |||||| ||||    || |||||||||||||||||||||||||||||||||||||| || ||||||||    
T  37434393 ttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatatcccaacagcaaccc 37434492  T
Q  554 gaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
     ||||||||||||||| ||||||||||  |||||| |||||||||||||||||||||||||||    
T  37434493 aaatattgccccacatccatatccgatcactaccgttttccagccaaatcctgattcttcttc 37434555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 409 - 616
Target Start/End: Original strand, 37531738 - 37531945
Alignment:
Q  409 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 508  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37531738 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37531837  T
Q  509 gggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat 608  Q
     ||||| |||||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||| ||||| || |||||||||||||||||||||    
T  37531838 aggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcctgat 37531937  T
Q  609 tcttcttc 616  Q
    ||||||||    
T  37531938 tcttcttc 37531945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 409 - 616
Target Start/End: Original strand, 37695233 - 37695440
Alignment:
Q  409 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 508  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37695233 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37695332  T
Q  509 gggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat 608  Q
     ||||| |||||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||| ||||| || |||||||||||||||||||||    
T  37695333 aggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagctttccagccaaatcctgat 37695432  T
Q  609 tcttcttc 616  Q
    ||||||||    
T  37695433 tcttcttc 37695440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 504 - 613
Target Start/End: Original strand, 37701422 - 37701531
Alignment:
Q  504 cattggggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatc 603  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37701422 cattgaggttttccagtgaagaagaatacattatatcccaagagcaacccgaatattgccccacatgcatatcctattgctaccgctttccagccaaatc 37701521  T
Q  604 ctgattcttc 613  Q
    |||| |||||    
T  37701522 ctgactcttc 37701531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 409 - 616
Target Start/End: Complemental strand, 37402520 - 37402313
Alignment:
Q  409 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 508  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37402520 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37402421  T
Q  509 gggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat 608  Q
     ||||| |||||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||| |||    
T  37402420 aggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagctttccagccaaatccggat 37402321  T
Q  609 tcttcttc 616  Q
    ||||||||    
T  37402320 tcttcttc 37402313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 409 - 616
Target Start/End: Original strand, 37592842 - 37593049
Alignment:
Q  409 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 508  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37592842 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37592941  T
Q  509 gggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgat 608  Q
     ||||| |||||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||| |||    
T  37592942 aggtttaccagtgaagaagaatacattatatcccaagaggaacccggatattgccccacatccatatccaattgccacagctttccagccaaatccggat 37593041  T
Q  609 tcttcttc 616  Q
    ||||||||    
T  37593042 tcttcttc 37593049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 510 - 615
Target Start/End: Original strand, 37439809 - 37439914
Alignment:
Q  510 ggttttccagtgaagaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgatt 609  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||  | || ||||||||||||||||||||||    
T  37439809 ggttttccagtgaagaagaatagattatatcccaatagcaacccgaatattgccccacatccatatccgatcaccacagctttccagccaaatcctgatt 37439908  T
Q  610 cttctt 615  Q
    | ||||    
T  37439909 cctctt 37439914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 37709922 - 37710056
Alignment:
Q  177 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 276  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  37709922 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattgatcactttaa-tttcttatttgttcaacaac 37710019  T
Q  277 ttacaatatatagcacattggtattaaaagatatatatata 317  Q
    ||||||||     |||||||||||||||| |||||||||||    
T  37710020 ttacaataa----cacattggtattaaaatatatatatata 37710056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 37531424 - 37531529
Alignment:
Q  177 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 276  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37531424 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37531521  T
Q  277 ttacaata 284  Q
    ||||||||    
T  37531522 ttacaata 37531529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 37592631 - 37592736
Alignment:
Q  177 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 276  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37592631 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37592728  T
Q  277 ttacaata 284  Q
    ||||||||    
T  37592729 ttacaata 37592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 177 - 284
Target Start/End: Original strand, 37694990 - 37695095
Alignment:
Q  177 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 276  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37694990 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37695087  T
Q  277 ttacaata 284  Q
    ||||||||    
T  37695088 ttacaata 37695095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 37394576 - 37394481
Alignment:
Q  222 ttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatata 317  Q
    ||||||||| |  |||||||||||||||||||||||| ||||||| |||| ||||||  |||||||| |||| ||||| |||||||||||||||||    
T  37394576 ttgaaagtatcataaaagcaattgatcactataaattccttatttattcatcaacttgaaatatataacacactggtactaaaagatatatatata 37394481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 38869593 - 38869660
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  38869593 ttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16199026 - 16199080
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  16199026 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 16199080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 524 - 617
Target Start/End: Original strand, 37427803 - 37427896
Alignment:
Q  524 gaagaatacattatatccgaatagcaacccgaatattgccccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttct 617  Q
    ||||| |||| ||||||| || | || ||| ||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  37427803 gaagagtacaatatatcccaagatcatcccaaatattgtcccacatgcatatcttattactaccgctttccagccaaatcctgattcctcttct 37427896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 16799556 - 16799624
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| ||||||| |||||    
T  16799556 ttgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccctcaaagccggggctgat 16799624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 37822032 - 37822126
Alignment:
Q  177 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaac 273  Q
    ||||||||||||||||||||| ||||||||||||||       || |||||||||| |||||||||||||||||| | |||||| ||||||||||||    
T  37822032 aagttgaagcaattaagtctt-atcatttattcaacgataaaatcctgaaagtaacaaaaaagcaattgatcact-ttaatttcatatttgttcaac 37822126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 27923951 - 27923897
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  27923951 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctca 27923897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 9364160 - 9364113
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcac 90  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9364160 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 37402636 - 37402566
Alignment:
Q  241 aattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatata 311  Q
    |||| |||||||||||||||||||||||| ||||||||  ||||||||  | | |||||||||||||||||    
T  37402636 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatata 37402566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 40389765 - 40389831
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    |||||| |||||| ||| |||||||||| ||||||||||||||||||||| ||||  ||||||||||    
T  40389765 ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 15480229 - 15480283
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  15480229 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 15480283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 19523159 - 19523105
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  19523159 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 19523105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 34756615 - 34756668
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 34756668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 7670787 - 7670743
Alignment:
Q  49 cccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||    
T  7670787 cccatgactgagggaggcccaactctgttgagctgtttgcacccc 7670743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 28822576 - 28822620
Alignment:
Q  62 gaggcccagctctgttgagctgtttgcaccccctcatagccgggc 106  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||    
T  28822576 gaggcccaactctgttgagctgtttgcaccccctcagaaccgggc 28822620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 30853332 - 30853280
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 95  Q
    |||||| ||||  ||||||||||||||||||  ||||||||||||||||||||    
T  30853332 ttgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcaccccct 30853280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 16592845 - 16592899
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  || ||||||| |||||||  ||||||||||||||||||||||    
T  16592845 ttgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccctca 16592899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 31881590 - 31881644
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  31881590 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 31881644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 36188019 - 36188073
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  36188019 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 36188073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 37531565 - 37531594
Alignment:
Q  255 aatttcttatttgttcaacaacttacaata 284  Q
    ||||||||||||||||||||||||||||||    
T  37531565 aatttcttatttgttcaacaacttacaata 37531594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 22987470 - 22987518
Alignment:
Q  46 aggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccc 94  Q
    ||||||||  |||| |||||||||||||  |||||||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccc 22987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 616
Target Start/End: Complemental strand, 37383693 - 37383641
Alignment:
Q  564 ccacatgcatatccgattgctaccgctttccagccaaatcctgattcttcttc 616  Q
    |||||||||||||| ||| | || ||||||||||||||||| ||||| |||||    
T  37383693 ccacatgcatatcctattaccactgctttccagccaaatccagattcctcttc 37383641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 44708348 - 44708281
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44708348 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 14552511 - 14552606
Alignment:
Q  198 gatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaacttacaatatatagcaca 293  Q
    |||||||||||||||       |||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  14552511 gatcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaatatatagcaca 14552606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 48157005 - 48156942
Alignment:
Q  46 aggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48157005 aggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 53507117 - 53507188
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgattct 114  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  53507117 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgcttct 53507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 43207474 - 43207543
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  43207474 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgatt 43207543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 9878919 - 9878986
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  9878919 ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 50939468 - 50939522
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  50939468 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctca 50939522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 34290874 - 34290928
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||    
T  34290874 ttgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctca 34290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 54407391 - 54407445
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  54407391 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacctcctca 54407445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 50258734 - 50258788
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  50258734 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctca 50258788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27078819 - 27078872
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27078872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27084616 - 27084669
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 36716276 - 36716329
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 36716329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 38681348 - 38681401
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 38681401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 48720530 - 48720579
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccc 92  Q
    ||||||||||||| ||| ||| || |||||||||||||||||||||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcaccc 48720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 54619454 - 54619507
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 54619507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 3954852 - 3954906
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3954852 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 13795253 - 13795199
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||| ||||||    
T  13795253 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacgccctca 13795199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 11467803 - 11467754
Alignment:
Q  63 aggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    ||||||||||| || ||||||||||||||||||||| ||| | |||||||    
T  11467803 aggcccagctcagtagagctgtttgcaccccctcatggccagccctgatt 11467754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 25373642 - 25373679
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcat 98  Q
    ||||||||||||| || |||||||||||||||||||||    
T  25373642 ggaggcccagctcagtagagctgtttgcaccccctcat 25373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 53149457 - 53149509
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 95  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||    
T  53149457 ttgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccct 53149509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 17353825 - 17353756
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  17353825 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgatt 17353756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 20711952 - 20712020
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  20711952 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 28075654 - 28075587
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    |||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  28075654 ttgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 19987032 - 19986966
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  19987032 ttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 27788922 - 27788976
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27788922 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 235466 - 235528
Alignment:
Q  50 ccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||||  | |||||||||||    
T  235466 ccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgatt 235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23070889 - 23070943
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 23070943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 13727650 - 13727703
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctca 13727703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 12083640 - 12083694
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| | |||||||||||  ||||||||||||||||||||||    
T  12083640 ttgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccctca 12083694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 19741223 - 19741277
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  19741223 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 19741277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 30832667 - 30832717
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  30832667 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 30832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 21280386 - 21280345
Alignment:
Q  56 ttgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  21280386 ttgagggaggcccagctcgtttgagctgtttgcaccccctca 21280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 21479349 - 21479296
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  || |||||||||||||||||||    
T  21479349 tgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctca 21479296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 27314777 - 27314818
Alignment:
Q  56 ttgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  27314777 ttgagggaggcccagctcgtttgagctgtttgcaccccctca 27314818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 47985202 - 47985268
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  47985202 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 38415108 - 38415175
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  38415108 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 48984077 - 48984131
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  48984077 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 48984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 24525918 - 24525972
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  24525918 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcaccccctca 24525972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 25010319 - 25010254
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcct 108  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||  |||||||||    
T  25010319 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 19691964 - 19691896
Alignment:
Q  43 ttgaggcccat-gattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||  | |||||||||    
T  19691964 ttgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 20091514 - 20091565
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccc 94  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  20091514 ttgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23551305 - 23551359
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||    
T  23551305 ttgaggcccatgattgagggaggtccaactctattgagctgtttgcaccccctca 23551359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 28749647 - 28749593
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 28749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 10329643 - 10329710
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| ||| |||| || ||| ||||||| |||||||||||||||||   ||||||||||    
T  10329643 ttgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 12596429 - 12596483
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  12596429 ttgagggccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 12596483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 26253117 - 26253067
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| |  |||||||||||||||||||| |||||| ||||||    
T  26253117 ggaggcccagctcagaagagctgtttgcaccccctcaaagccggccctgat 26253067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 18777019 - 18777072
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  |||||||||||||||| |||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctca 18777072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 223596 - 223552
Alignment:
Q  65 gcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||    
T  223596 gcccagctcagtagagctgtttgcaccccctcattgccggccctg 223552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 26715997 - 26715931
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  26715997 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 9045898 - 9045844
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9045898 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 9045844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 27506975 - 27507029
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27506975 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27507029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 24410302 - 24410250
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24410302 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccct 24410250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10762799 - 10762853
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  10762799 ttgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctca 10762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 4505744 - 4505691
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctca 4505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 8327533 - 8327488
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgc 88  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8327533 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 3952965 - 3952911
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3952965 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3952911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 3155068 - 3155015
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 6964857 - 6964804
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 6964804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 7162743 - 7162689
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  7162743 ttgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccctca 7162689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 12337689 - 12337743
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||| ||||||  ||||||||||||||||||||||    
T  12337689 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctca 12337743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 34693212 - 34693159
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  34693212 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 34693159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 34715624 - 34715571
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  34715624 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 34715571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 42600650 - 42600582
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  42600650 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 10917256 - 10917206
Alignment:
Q  47 ggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  10917256 ggcccatgagtgagggaggcccagctctgttgagctgtttgcaccccctca 10917206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 23606855 - 23606909
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  23606855 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctca 23606909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 23798495 - 23798564
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 112  Q
    ||||||||||||| ||| |||||||||||| |||||||||||| |||||||||||  ||| |||||||||    
T  23798495 ttgaggcccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctgatt 23798564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 20003876 - 20003930
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  20003876 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 20003930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 2952473 - 2952526
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 2952526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 3048774 - 3048827
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 5860996 - 5861049
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 5861049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 45193876 - 45193926
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    |||||||||||||||| |||||||||||||| || || |||||| ||||||    
T  45193876 ggaggcccagctctgtagagctgtttgcacctccccagagccggccctgat 45193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 45472257 - 45472203
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||  || |||||||||| |||||||||||||||||||||||    
T  45472257 ttgaggcccatccttgggggtggcccagctcggttgagctgtttgcaccccctca 45472203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 30883175 - 30883122
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||| ||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccactca 30883122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 4322502 - 4322546
Alignment:
Q  60 aggaggcccagctctgttgagctgtttgcaccccctcatagccgg 104  Q
    ||||||||||||||  | ||||||||||||||||||||| |||||    
T  4322502 aggaggcccagctcaatagagctgtttgcaccccctcatggccgg 4322546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 9173255 - 9173322
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  9173255 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 27559513 - 27559446
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  27559513 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcaaaaccgggcctga 27559446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 1367111 - 1367165
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1367111 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 1367165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 13913716 - 13913770
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13913716 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 13913770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 40502024 - 40502078
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40502024 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 40502078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 44895529 - 44895466
Alignment:
Q  47 ggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 110  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  44895529 ggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 51607674 - 51607741
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    |||||||||||||||| | |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  51607674 tgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgat 51607741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 19955597 - 19955547
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 93  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  19955597 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 19955547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 14146271 - 14146217
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  14146271 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 14146217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 17168835 - 17168781
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||| |||||||    
T  17168835 ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctca 17168781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 23181777 - 23181723
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||| ||||  || |||||||||| |||||||||||||||||||||||    
T  23181777 ttgaggcccatcattgggggtggcccagctcggttgagctgtttgcaccccctca 23181723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 27906949 - 27907002
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27907002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 44655604 - 44655551
Alignment:
Q  44 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 44655551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 5027992 - 5028028
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5027992 ggaggcccagctcggttgagctgtttgcaccccctca 5028028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 3406389 - 3406335
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  3406389 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctca 3406335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 3440431 - 3440485
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  3440431 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctca 3440485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 6771762 - 6771708
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  || | |||||||||||||  ||||||||||||||||||||||    
T  6771762 ttgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctca 6771708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 6888535 - 6888481
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  6888535 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 6888481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 10912094 - 10912148
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||||||||  ||| ||||||||||||||  |||||||||| |||||||||||    
T  10912094 ttgaggcccatccttggaggaggcccagctcgtttgagctgttcgcaccccctca 10912148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 12037637 - 12037587
Alignment:
Q  61 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| || |||||||||||||||||||| || ||| ||||||    
T  12037637 ggaggcccagctcagtagagctgtttgcaccccctcaaagacggccctgat 12037587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 41697279 - 41697333
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||| ||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  41697279 ttgatgcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 41697333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 106445 - 106379
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 109  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  106445 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 4215 - 4147
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 111  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  4215 ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 1077 - 1023
Alignment:
Q  43 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 97  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  1077 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 1023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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