View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9284_low_17 (Length: 615)
Name: NF9284_low_17
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 264 - 604
Target Start/End: Original strand, 19644340 - 19644682
Alignment:
| Q |
264 |
catctgggtagtcatataaggaatacaattaacagtgattatcatgttctcatatgttcaaactaaatggtaaccgcatgcatgcacgtgcgcgaacaaa |
363 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
19644340 |
catctgggtagtcaaataaggaacacaattaacaatgattatcatgttttcatatgttcaagctaaatggtaaccgcatgcatgcatgtgcgcgaacaaa |
19644439 |
T |
|
| Q |
364 |
cacatatattatgttactaaactataatgatagtgaagttaatagagaagtcccttgaaatagtaattagagagtcttacgatgaatgatgaatgaat-a |
462 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
19644440 |
ctcatatattatgttactaaactataatgatagtgaagttaatagagaagtcccttgaaatagtaattagagagtcttacgatgaataacgaatgaataa |
19644539 |
T |
|
| Q |
463 |
aagatcctt-aacaaaatgaaggacaaaaaaccgattcaatgtcttgttacatagatgatgaataaacaaaaattgagaatagtaacgatgagtgttaga |
561 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19644540 |
aagaaccttaaacaaaatgaaggacaaaaaaccgattcaatgtcttattacatagatgatgaataaacaaaagttgagaatagtaacgatgagtgttaga |
19644639 |
T |
|
| Q |
562 |
aaacactattgaagatgatgaagaatgcatttagaacaccaaa |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19644640 |
aaacactattgaagatgatgaagaatgcatttagaacaccaaa |
19644682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 19643889 - 19644090
Alignment:
| Q |
17 |
aataagtgctaaatcaacgggtttgtttactattcttgcaaaggccataacaaatatatctatttactgtttgttcattgttgctaacctttcatattat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19643889 |
aataagtgctaaatcaacgggtttgtttactattcttgcaaaggccataacaaatatatctatttactgtttgttcattgttgctaacctttcatattat |
19643988 |
T |
|
| Q |
117 |
catttttccttcaaattcattgtctaattttgtccattagacaatcattttcatcctttgtacattgtatcttccgtatcttctttatatatatttgcca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19643989 |
tatttttccttcaaattcattgtctaattttgtccattagacaatcattttcatcctttgtacattgtatcttccgtatcttctttatatatatttgcca |
19644088 |
T |
|
| Q |
217 |
tt |
218 |
Q |
| |
|
|| |
|
|
| T |
19644089 |
tt |
19644090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University