View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_19 (Length: 582)
Name: NF9284_low_19
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 14 - 566
Target Start/End: Original strand, 6060774 - 6061326
Alignment:
| Q |
14 |
ggagcagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacccgat |
113 |
Q |
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| T |
6060774 |
ggagaagagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatggatcacctgat |
6060873 |
T |
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| Q |
114 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
213 |
Q |
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| T |
6060874 |
gaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctgatgataacc |
6060973 |
T |
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| Q |
214 |
attttgacttttgatgaatttgcatggagcaatcaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagtagcaagcatggtatcaaa |
313 |
Q |
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| T |
6060974 |
attttgacttttgatgaatttgcatggagcaaacaggaatagaagaagtcgctgtaatctaggtgttcttgaagaatcaagtagcaagcatggtatcaaa |
6061073 |
T |
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| Q |
314 |
tagcgagtgacttgtatattaagttcaaacaacttctatttgatgttagttatatttctgtactgttatgcatacgattttgcttgctaaggtttcaatc |
413 |
Q |
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| T |
6061074 |
tagcgagtgacttgtatattaagttcaaacaacttctatttgatgttagttatatttctgtactgttatgcatacaattttgcttgctaaggtttcaatc |
6061173 |
T |
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| Q |
414 |
tgcaaggccatttaatgtacaatggtttaattttgacatgatcgaccaatgcgaaattcatttgcaaaattatttgctttaagcaatacaagttgtgaag |
513 |
Q |
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| T |
6061174 |
tgcaaggccatttaatgtacaatggtttaattttgacatgatcgaccaatgcgaaattcatttgcaaaattatttgctttaagcaatacaagttgtgaag |
6061273 |
T |
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| Q |
514 |
atatgtatgtgctgcctgatggtcatcaataatacattgtaattcgattgaag |
566 |
Q |
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| T |
6061274 |
atatgtatgtgctgcctgatggtcatcaataatacattgtaattcgattgaag |
6061326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 6047059 - 6047135
Alignment:
| Q |
129 |
gggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
205 |
Q |
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| T |
6047059 |
gggatctcagacatagaccttttatctgacaatgattatgactatgatgaattcttaggtgggagtgaattttctga |
6047135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 6043725 - 6043816
Alignment:
| Q |
111 |
gatgaagattatccagatgggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
205 |
Q |
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| T |
6043725 |
gatgaagactacccatctgggatctcagacatggatcttttatctgacgatgattatgaatatgacgaattctc---tgggagtgaattttctga |
6043816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 6132511 - 6132428
Alignment:
| Q |
19 |
agagatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagctgaatgtgattatg |
102 |
Q |
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| T |
6132511 |
agagatttatagaacaagtcaagtatttacggcttccatatgatgccactgatgattatccatttcaagcggcatttgattatg |
6132428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 6053730 - 6053829
Alignment:
| Q |
22 |
gatgtaaagaacaaatcaagtatttattgcttccatatgatccctccgatgactattcatttcaagc---tgaatgtgattatggatcacccgatgaaga |
118 |
Q |
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| T |
6053730 |
gatgtaaagagcagatcaagtattttcggcttccacatgacgccactgatgactatccatttcaaacatctgaatgtgattatggatcacctgttgaaga |
6053829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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