View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_32 (Length: 405)
Name: NF9284_low_32
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 30343372 - 30342992
Alignment:
| Q |
18 |
gttgtaaccttgggtatccacttgacttgtaaacttttatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacctgcatgccaaata |
117 |
Q |
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| T |
30343372 |
gttgtaaccttgggtatccacttgacttgtaaacttctatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacttgcatgccagata |
30343273 |
T |
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| Q |
118 |
cca-------gaacttgaaacctggagaacatggtttaaatatcttcatcttccttcatcttgaaggtttcatactgatgcaccaaaagattggctttca |
210 |
Q |
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| T |
30343272 |
ccatataccagaacttgaaacctggagaacatggtttaaatatcttcatcttccttcatcttgaaggtttcatactgatgcactagaagattggctttca |
30343173 |
T |
|
| Q |
211 |
cctcttttatgtgctgatttccttcataagtagcacaaagagcataaagatactcttgggagtagaattattatcaatcttgtctaattccttgaattat |
310 |
Q |
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| T |
30343172 |
cctctttcatgtgctgatttccttcataagtagcacaaagagcataaagatactcttgggagtagaattatcagcaatcttgtctaattccttgaattat |
30343073 |
T |
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| Q |
311 |
aaagcattcaccaaattgtttatgacgttgtgatgctttttgtattctttcttttcatcatcaatcaaacctttcttctgt |
391 |
Q |
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| T |
30343072 |
aaagcattcaccaaattgtttatgactttgtgatgctttttgtattctttcttttcattatcaatcaaacctttcctctgt |
30342992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 28560475 - 28560124
Alignment:
| Q |
20 |
tgtaaccttgggtatccacttgacttgtaaacttttatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacctgcatgccaaatacc |
119 |
Q |
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| T |
28560475 |
tgtaaccttgggcctccacttgactagtaaacttatgagaatcttgttaacatgatccttagaagaatagcttttgtcaagtacatgcattctagatatc |
28560376 |
T |
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| Q |
120 |
agaacttgaaacctggagaacatgg-tttaaatatcttcatcttccttcatcttgaaggtttcatactgatgcaccaaaagattggctttcacctctttt |
218 |
Q |
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| ||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| | |||||||||| | |||| | | |||||| | |||| || |
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| T |
28560375 |
aaaacatgaaacctagagaacatggttttcgatatcttcatcttcctttatcttcagggtttcataccgtggcactagcaaattggccattgcctccttg |
28560276 |
T |
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| Q |
219 |
atgtgctgatttccttcataagtagcacaaagagcat-aaagatactcttgggagtagaattattatcaatcttgtctaattccttgaattataaagcat |
317 |
Q |
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| T |
28560275 |
atttgctaatttccttcatatgtagcatagagagcatcaaacgtactcttaggagtagatttatcaacaatcttgttgaattccttgaattccaaaacat |
28560176 |
T |
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| Q |
318 |
tcaccaaattgtttatgacgttgtgatgctttttgtattctttcttttcatc |
369 |
Q |
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| T |
28560175 |
tcacctaaatgtttctcgctttgtgatgctttttgtattccttcttttcatc |
28560124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 23212877 - 23212803
Alignment:
| Q |
46 |
gtaaacttttatgaatcttgtaaacatgatccttagtagaataactcttgtcaagtacctgcatgccaaatacca |
120 |
Q |
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||||||||||| ||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
23212877 |
gtaaacttttaagaatcttgttaacatgatccttagttatgtagctcttgtcaagtacatgcatgccaaatacca |
23212803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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