View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_38 (Length: 377)
Name: NF9284_low_38
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 33540262 - 33539911
Alignment:
| Q |
20 |
tgctgaagtagttcttatgagtcttaaatagccata--atcattctatggctccttgcagcaacaatttgctattgggatgggttgccatatttttacga |
117 |
Q |
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| T |
33540262 |
tgctgaagtagttcttaggagtcttatatagccatacaatcattctatggctccttacaacaacaattttctactgggatgggttgctatatttttatga |
33540163 |
T |
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| Q |
118 |
ctataggcta-gaacttttcaaaatcatcta----ccaaaacattttgagtatacaaatctacaaagttaagtcagatggaaatgttttgcaatgaccat |
212 |
Q |
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| T |
33540162 |
ctataggttaagaaattttccaaataatctaattaccaaaacattttgagtatacaaatctacaaagttgagtcagatggaaatgttttacaatgaccat |
33540063 |
T |
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| Q |
213 |
ata-----ttagtctttacaataatttgcctaatgctccaccttgttttttgctacttttgatcgcctgatcaggtttaacacatatccaacctcctatt |
307 |
Q |
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| T |
33540062 |
ataatatattagtcttcacaataatttgcctaatgctccaccttgttttttgctacttttgatagtgtgatcaggtttaacacatatccaacctcctatt |
33539963 |
T |
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| Q |
308 |
ctctcactcttataacatttctgctttgctttgcttcttcgtcctacttttc |
359 |
Q |
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| T |
33539962 |
ctctcactcttataatatttctgctttgctttgcttcttcgtcctacttttc |
33539911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 9455598 - 9455437
Alignment:
| Q |
44 |
taaatagccataatcattctatggctccttgcagcaacaatttgctattgggatgggttgccatatttttacgactataggct-agaacttttcaaaatc |
142 |
Q |
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| T |
9455598 |
taaatagacataacctttctttagctccttgcagcaacaatttgctattgggatcagttgctatatttatatgacgaaaggttaagaacttcaaataatt |
9455499 |
T |
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| Q |
143 |
atctaccaaaacattttgagtatacaaatctacaaagttaagtcagatggaaatgttttgcaat |
206 |
Q |
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| T |
9455498 |
aattaccaaaac--tttgagtatacaaatcttcaaagctgggtcagatggaaatgttttacaat |
9455437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 9495862 - 9495926
Alignment:
| Q |
162 |
gtatacaaatctacaaagttaagtcagatggaaatgttttgcaatgaccatatattagtctttac |
226 |
Q |
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| T |
9495862 |
gtatacaaatttacagacttgagtcggatggaaatgttttacaattaccatgtataagtctttac |
9495926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 233707 - 233656
Alignment:
| Q |
27 |
gtagttcttatgagtcttaaatagcc--ataatcattctatggctccttgca |
76 |
Q |
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| T |
233707 |
gtagttattaggagtcttaaatagccatataaccattctatggctccttgca |
233656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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