View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_40 (Length: 327)
Name: NF9284_low_40
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 13413886 - 13414199
Alignment:
| Q |
1 |
atttagaatgagtattagtatagtatatttacaaacatgggtagtactaatgataacaataaaaggagttcaaaacatacccaggaacaagtggatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13413886 |
atttagaatgagtattagtatagtatatttacaaacatgggtagtactaatgataacaataaaaggagttcaaaacatacccaggaacaagtggatagaa |
13413985 |
T |
|
| Q |
101 |
ggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13413986 |
ggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaa |
13414085 |
T |
|
| Q |
201 |
ttttggtgtaccaaagttgaattaatttgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagac--aaaat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13414086 |
ttttggtgtaccaaagttgaattaatttgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagacaaaaaat |
13414185 |
T |
|
| Q |
299 |
aattccatctaaat |
312 |
Q |
| |
|
||||| |||||||| |
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| T |
13414186 |
aattcaatctaaat |
13414199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 13426921 - 13427072
Alignment:
| Q |
76 |
catacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctac |
175 |
Q |
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||||||| ||||| | |||||||| |||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
13426921 |
cataccctggaactaatggatagatggaattgccccattcattcttcatcatatggagatcagtgtgacatataccacaatacaacaccttgaatgctac |
13427020 |
T |
|
| Q |
176 |
atctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt |
227 |
Q |
| |
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|||||| ||||| ||||||||||| ||||| || | ||||||| |||||||| |
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| T |
13427021 |
atctttctcacctgtttccctaaagttttgatgcatcaaagttaaattaatt |
13427072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 13419971 - 13420135
Alignment:
| Q |
63 |
aaggagttcaaaacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaaca |
162 |
Q |
| |
|
|||||||| || ||||||| ||||| | |||||||| |||| | |||||||||||||| ||||||||| |||| ||| ||||| |||||||||| || |
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| T |
13419971 |
aaggagttggaagcataccctggaactaatggatagatggaatttccccattcattcttcatcatatggaggtcagtgtggcatataccacaatacatca |
13420070 |
T |
|
| Q |
163 |
ccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt |
227 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||||| || | ||| ||||||||||| |
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|
| T |
13420071 |
ccttgaacgctacatctttctcaccagtttccctaaagttttgatgcatcaagattgaattaatt |
13420135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 13388867 - 13388782
Alignment:
| Q |
108 |
ccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc |
193 |
Q |
| |
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|||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
13388867 |
ccccattcattcttcgccatgtggacatctgagtgacatatcccacaatacaatattttgaatgccacatctttttcaccagtttc |
13388782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 13447595 - 13447656
Alignment:
| Q |
135 |
tcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct |
196 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
13447595 |
tcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccct |
13447656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 13393278 - 13393158
Alignment:
| Q |
73 |
aaacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgc |
172 |
Q |
| |
|
|||| ||||||||||| ||||||||| || |||||||||||||||| |||||| ||||| |||||||||||||||||||||| || || ||||| |
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| T |
13393278 |
aaacgtacccaggaactagtggataggtagacatgccccattcattctttatcatatgaagatccgagtgacatatcccacaatacagtactttaaatgc |
13393179 |
T |
|
| Q |
173 |
tacatctttttcaccagtttc |
193 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
13393178 |
cacatctttttcacccgtttc |
13393158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 13454357 - 13454463
Alignment:
| Q |
78 |
tacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacat |
177 |
Q |
| |
|
||||| ||||| ||||||||| | |||||||||||||||||| ||| |||| || || ||||||||||| |||||||||||||| | |||||||| | |
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| T |
13454357 |
tacccgggaactagtggatagttcgtagtgccccattcattcttcgccttatgaaggtccgagtgacatattccacaatacaacactcttaatgctacgt |
13454456 |
T |
|
| Q |
178 |
ctttttc |
184 |
Q |
| |
|
||||||| |
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| T |
13454457 |
ctttttc |
13454463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 199
Target Start/End: Complemental strand, 13409355 - 13409248
Alignment:
| Q |
92 |
tggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtt |
191 |
Q |
| |
|
||||||| ||| ||||||||| | ||||| ||||| ||||| || | ||| ||||| || ||||||||||| |||||||| |||||||| ||||| ||| |
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| T |
13409355 |
tggataggtggatgtgccccatccgttcttggccatgtggaggtctgtgtggcatattccgcaatacaacactttgaatgccacatctttctcacctgtt |
13409256 |
T |
|
| Q |
192 |
tccctaaa |
199 |
Q |
| |
|
|||||||| |
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|
| T |
13409255 |
tccctaaa |
13409248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 13385065 - 13384946
Alignment:
| Q |
74 |
aacatacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgct |
173 |
Q |
| |
|
||||||||| ||||| ||||||||| || |||||||||| ||||| ||||| || ||| ||||||||||| ||||||||||| | |||||||| |
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|
| T |
13385065 |
aacataccccggaactagtggataggttgatatgccccattcgttcttcgccatgcagacatctgagtgacatattccacaatacaatattttgaatgcc |
13384966 |
T |
|
| Q |
174 |
acatctttttcaccagtttc |
193 |
Q |
| |
|
||||||||||| || ||||| |
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|
| T |
13384965 |
acatctttttctcctgtttc |
13384946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 47601696 - 47601826
Alignment:
| Q |
76 |
catacccaggaacaagtggatagaaggaagtgccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctac |
175 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||||||||||||| ||| |||||||| | ||||||||| |||||| |||| | |||| || || |
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|
| T |
47601696 |
catacccaggaactagtggataggtggatatgccccattcattcttaatcatgtggagatctgtgtgacatattccacaaaacaatattttgagtgacac |
47601795 |
T |
|
| Q |
176 |
atctttttcaccagtttccctaaaattttgg |
206 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| |
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|
| T |
47601796 |
atctttttcatttgtttccctgaaagtttgg |
47601826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 28429394 - 28429306
Alignment:
| Q |
108 |
ccccattcattcttagccatatggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct |
196 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||||||||| |||||| | | ||| |||||| ||||||||| || ||||||||||| |
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|
| T |
28429394 |
ccccattcattcttcaacatgtgaagatctgagtgacatataccacaaaatagcactttgaatcttacatctttctctccagtttccct |
28429306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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