View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_44 (Length: 289)
Name: NF9284_low_44
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 270
Target Start/End: Original strand, 1353820 - 1354072
Alignment:
| Q |
17 |
ttaatagtattataaagacctctatagnnnnnnnnnctttctagaatacactttagatttcgctttaggtttcaataagtgttgaattgctcttactaac |
116 |
Q |
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| T |
1353820 |
ttaatagtattataaagacctctatagtttttttt-ctttctagaatacactttagatttcgctttaggtttcaataagcattgaattgctcttactaac |
1353918 |
T |
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| Q |
117 |
attaactatgttagatttcgttttaggcttcgataaatgttgaagatattttataatggatttgttaaacattttgtgatgagtggaactggataattgt |
216 |
Q |
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||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||| |
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| T |
1353919 |
attaactatgttagatttcgttttagggttcgataagtgttaaagatattttataatgggtatgttaaatattttgtgatgagtggaacttgataattgt |
1354018 |
T |
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| Q |
217 |
tcttctcccatctgtttttgttaattccatcaaagtagtcgagcgtgagtctca |
270 |
Q |
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| T |
1354019 |
tcttctcccatctgtttttgttaatcccgtcaaagtagtcgagcgtgagtctca |
1354072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 22842147 - 22842206
Alignment:
| Q |
208 |
gataattgttcttctcccatctgtttttgttaatt-ccatcaaagtagtcgagcgtgagt |
266 |
Q |
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| T |
22842147 |
gataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagt |
22842206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 9979738 - 9979685
Alignment:
| Q |
214 |
tgttcttctcccatctgtttttgttaattc-catcaaagtagtcgagcgtgagt |
266 |
Q |
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| T |
9979738 |
tgttcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagt |
9979685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 37688820 - 37688848
Alignment:
| Q |
210 |
taattgttcttctcccatctgtttttgtt |
238 |
Q |
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| T |
37688820 |
taattgttcttctcccatctgtttttgtt |
37688848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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