View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9284_low_49 (Length: 240)

Name: NF9284_low_49
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9284_low_49
NF9284_low_49
[»] chr4 (6 HSPs)
chr4 (17-57)||(52104824-52104864)
chr4 (209-240)||(23390681-23390712)
chr4 (209-240)||(25814575-25814606)
chr4 (209-240)||(28013199-28013230)
chr4 (209-240)||(40319180-40319211)
chr4 (209-240)||(52759983-52760014)
[»] chr8 (4 HSPs)
chr8 (209-240)||(7087808-7087839)
chr8 (209-240)||(16871760-16871791)
chr8 (209-240)||(24247615-24247646)
chr8 (209-240)||(33628544-33628575)
[»] chr6 (2 HSPs)
chr6 (209-240)||(3448296-3448327)
chr6 (209-240)||(5078328-5078359)
[»] chr5 (1 HSPs)
chr5 (209-240)||(14054593-14054624)
[»] chr3 (1 HSPs)
chr3 (209-240)||(542545-542576)
[»] chr2 (2 HSPs)
chr2 (209-240)||(6279730-6279761)
chr2 (209-240)||(41516027-41516058)
[»] chr1 (3 HSPs)
chr1 (209-240)||(22667458-22667489)
chr1 (209-240)||(28712092-28712123)
chr1 (209-240)||(33486124-33486155)
[»] chr7 (1 HSPs)
chr7 (209-237)||(27275957-27275985)


Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 52104864 - 52104824
Alignment:
Q  17 aaaaagtcatgaacatgtgtaagaaagtagttaatctggcc 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52104864 aaaaagtcatgaacatgtgtaagaaagtagttaatctggcc 52104824  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 23390681 - 23390712
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  23390681 aatacccataatagtgaatattgattattttt 23390712  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 25814606 - 25814575
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  25814606 aatacccataatagtgaatattgattattttt 25814575  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 28013230 - 28013199
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  28013230 aatacccataatagtgaatattgattattttt 28013199  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 40319180 - 40319211
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  40319180 aatacccataatagtgaatattgattattttt 40319211  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 52760014 - 52759983
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  52760014 aatacccataatagtgaatattgattattttt 52759983  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 7087808 - 7087839
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  7087808 aatacccataatagtgaatattgattattttt 7087839  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 16871791 - 16871760
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  16871791 aatacccataatagtgaatattgattattttt 16871760  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 24247615 - 24247646
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  24247615 aatacccataatagtgaatattgattattttt 24247646  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 33628544 - 33628575
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  33628544 aatacccataatagtgaatattgattattttt 33628575  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 3448327 - 3448296
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  3448327 aatacccataatagtgaatattgattattttt 3448296  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 5078328 - 5078359
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  5078328 aatacccataatagtgaatattgattattttt 5078359  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 14054593 - 14054624
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  14054593 aatacccataatagtgaatattgattattttt 14054624  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 542545 - 542576
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  542545 aatacccataatagtgaatattgattattttt 542576  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 6279761 - 6279730
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  6279761 aatacccataatagtgaatattgattattttt 6279730  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 41516058 - 41516027
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  41516058 aatacccataatagtgaatattgattattttt 41516027  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 22667489 - 22667458
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  22667489 aatacccataatagtgaatattgattattttt 22667458  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 28712123 - 28712092
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  28712123 aatacccataatagtgaatattgattattttt 28712092  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 33486155 - 33486124
Alignment:
Q  209 aatacccataatagtgaatattgattattttt 240  Q
    ||||||||||||||||||||||||||||||||    
T  33486155 aatacccataatagtgaatattgattattttt 33486124  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 27275957 - 27275985
Alignment:
Q  209 aatacccataatagtgaatattgattatt 237  Q
    |||||||||||||||||||||||||||||    
T  27275957 aatacccataatagtgaatattgattatt 27275985  T

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