View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9284_low_7 (Length: 730)
Name: NF9284_low_7
Description: NF9284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9284_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 33277168 - 33276884
Alignment:
| Q |
15 |
gacatcaacaccttcaaatgggtaaccaaaaaatattcattacctttgcaatatttttctttgattagttttttatgcatcatataaaagcttatgcatc |
114 |
Q |
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| T |
33277168 |
gacatcaacaccttcaaatgggtaaccaaaaaatattcattacctttgcaatatttttttttgattagttttttatgcatcatataaaagcttatgcatc |
33277069 |
T |
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| Q |
115 |
aagttttgtcacaattagagagaaaatagaataaactttgtgtaagttctacataagaaattttataagttaataaatcaccatttgagtttaacaagtc |
214 |
Q |
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| T |
33277068 |
aagtttagtcacaattagagagaaaatagaataaactctgtataagttctacatgagaaattttataagttaataaagcaccatttgagtttaacaagtc |
33276969 |
T |
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| Q |
215 |
tgcatgtaacatagttttagtgtcttacacacatgataaattatgtctcatcaaggtgccccattatttgtatcatgtcctaaag |
299 |
Q |
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| T |
33276968 |
tgcatgtaacatagttttagtgtcttacacacatgataaataatgtctcatcaaggtgccatattatttgtatcatgtcctaaag |
33276884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 333 - 574
Target Start/End: Complemental strand, 33276729 - 33276488
Alignment:
| Q |
333 |
ttagtgatcttatagtttgttttattaattgaactgtggttgcagggtgttgcgaaccgtggtgcttctgttagggtaggaagggagactgagaaagcag |
432 |
Q |
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| T |
33276729 |
ttagtgatcttatagtttgttttattaattgaactgtggttgcagggtgttgcgaaccgtggtgcttctgttagggtaggaagggagactgagaaagcag |
33276630 |
T |
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| Q |
433 |
ggaagggatattttgaggacagaaggcctggatctaacatgaatccgtatgtggtcacatccatgatagcagagacaaccatcctctggaaaccatgaac |
532 |
Q |
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| T |
33276629 |
ggaagggatattttgaggacagaaggcctggatctaacatgaatccgtatgtggtcacatccatgatagcagagacaaccatcctctggaaaccatgaac |
33276530 |
T |
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| Q |
533 |
aaccttggaattaccagcacatattagtactaagttgtgata |
574 |
Q |
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| T |
33276529 |
aaccttggaattaccagcacatattagtactaagttgtgata |
33276488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 617 - 710
Target Start/End: Complemental strand, 33276445 - 33276352
Alignment:
| Q |
617 |
agtcgcatgatgtttaattatgggcttgtttgactttggtttccattgctttatgaaagtcagtttgcttctttcccttattgtcttgttttaa |
710 |
Q |
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| T |
33276445 |
agtcgcatgatgtttaattatgggcttgtttgactttggtttccattgctttatgagagtcactttgcttctttcccttattgtcttgttttaa |
33276352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 33276816 - 33276783
Alignment:
| Q |
300 |
atatccatgtaatagaaaacctatgttggtgaat |
333 |
Q |
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| T |
33276816 |
atatccatgtaatagaaaacctatgttggtgaat |
33276783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 376 - 528
Target Start/End: Complemental strand, 29441174 - 29441022
Alignment:
| Q |
376 |
agggtgttgcgaaccgtggtgcttctgttagggtaggaagggagactgagaaagcagggaagggatattttgaggacagaaggcctggatctaacatgaa |
475 |
Q |
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| T |
29441174 |
agggtgttgcaaaccgtggtgcgtcgattagagttggaagggacacagagaaagcaggaaaaggttatttcgaggacaggaggccatcatctaacatgga |
29441075 |
T |
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| Q |
476 |
tccgtatgtggtcacatccatgatagcagagacaaccatcctctggaaaccat |
528 |
Q |
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| T |
29441074 |
tccatatgttgttacttccatgattgcagacaccaccattctctggaaaccat |
29441022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 531
Target Start/End: Complemental strand, 26247172 - 26247017
Alignment:
| Q |
376 |
agggtgttgcgaaccgtggtgcttctgttagggtaggaagggagactgagaaagcagggaagggatattttgaggacagaaggcctggatctaacatgaa |
475 |
Q |
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||||||| || ||||||||||| ||||||||||| ||||| || || || |||| || || || || |||||||| ||||||||| ||||| ||| | |
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| T |
26247172 |
agggtgtggcaaaccgtggtgcatctgttagggttggaagagacacagaaaaagatggcaaaggttactttgaggatagaaggccttcttctaatatgga |
26247073 |
T |
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| Q |
476 |
tccgtatgtggtcacatccatgatagcagagacaaccatcctctggaaaccatgaa |
531 |
Q |
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| T |
26247072 |
tccctatgtggttacttccatgattgctgaaactacccttctatggaaaccatgaa |
26247017 |
T |
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