View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9285_low_1 (Length: 397)
Name: NF9285_low_1
Description: NF9285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9285_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 25 - 384
Target Start/End: Original strand, 3205249 - 3205608
Alignment:
| Q |
25 |
gcaaccctctgttacaagcttttttgaattttgatgtttgaaatatgttgttaaaactggaattcctttttctcatttagcgcaacttgtgctaacgaga |
124 |
Q |
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| T |
3205249 |
gcaaccctctgttacaagcttttttgaattttgatgtttgaaatatgttgttaaaactggaattcctttttctcatttagcgcaacttgtgctaacgaga |
3205348 |
T |
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| Q |
125 |
catacacaatatacccaagaccgtttaaatgaaatgacaaggtttctcgctcaactaaaaatctagattctcaggcttaaacacgagattgaacatgcaa |
224 |
Q |
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| T |
3205349 |
catacacaatatacccaagaccgtttaaatgaaatgacaaggtttctcgctcaaccaaaaatctagattctcaggtttaaacacgagattgaacatgcaa |
3205448 |
T |
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| Q |
225 |
ctacattaaaactcatagggagaatttgctgcctatttagatcctacaaggcttagaggaaactaagccgtcttaacctttcctactgcgaaactccaaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3205449 |
ctacattaaaactcatagggagaatttgctgcctatttaaatcctacaaggcttagaggaaactaagccgtcttaacctttcctactgcgaaactccaaa |
3205548 |
T |
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| Q |
325 |
ttataagttgtgaagtcggtgtttcaacagccatgaagctttttgtagaagtttagagaa |
384 |
Q |
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| T |
3205549 |
ttataagttgtgaagtcggtgtttcaacagccatgaagctttttgcagaagtttagagaa |
3205608 |
T |
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