View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9285_low_6 (Length: 280)

Name: NF9285_low_6
Description: NF9285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9285_low_6
NF9285_low_6
[»] chr3 (6 HSPs)
chr3 (1-280)||(40591278-40591557)
chr3 (8-280)||(40601935-40602207)
chr3 (1-257)||(40568372-40568628)
chr3 (17-257)||(40597776-40598016)
chr3 (1-257)||(40579430-40579686)
chr3 (1-257)||(40572973-40573229)
[»] chr2 (4 HSPs)
chr2 (17-260)||(2015105-2015348)
chr2 (8-104)||(11845091-11845187)
chr2 (8-104)||(11849820-11849916)
chr2 (52-104)||(11853055-11853107)
[»] chr4 (5 HSPs)
chr4 (1-164)||(14153418-14153577)
chr4 (88-192)||(14022898-14023002)
chr4 (12-175)||(13765643-13765805)
chr4 (81-186)||(14155123-14155228)
chr4 (1-139)||(14023234-14023372)
[»] chr1 (2 HSPs)
chr1 (1-92)||(1868413-1868504)
chr1 (46-92)||(1842849-1842895)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 40591278 - 40591557
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40591278 gtggtcgttctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccca 40591377  T
Q  101 atggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40591378 atggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcctggc 40591477  T
Q  201 atacttacattctgcagcttctactccaatcattcatagagatataaaatctacaaacatcctcattgatgtcaatctca 280  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  40591478 atacttacattctgctgcttctactccaatcattcatagagatataaaatctacaaacatcctcctcgatgtcaatctca 40591557  T

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Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 40601935 - 40602207
Alignment:
Q  8 ttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatggaac 107  Q
    |||||||| |||||||||||||||||||||||    |||||||||| |||||||| |||||||||||||||||||||||||| || ||| ||||||| ||    
T  40601935 ttctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctgtttagaaacagaagttccattgcttgtttatgagtttatttccaatggtac 40602034  T
Q  108 tgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggcatactta 207  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  40602035 tgtttatgatcatcttcatgatcaaaaccagtctataaagcttacatggaacacaagattaagaatagcaacagaaactgctggagtcttggcatactta 40602134  T
Q  208 cattctgcagcttctactccaatcattcatagagatataaaatctacaaacatcctcattgatgtcaatctca 280  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  40602135 cattctgctgcttctactccaatcattcatagagatataaaatctacaaacatcctcctagatggcaatctca 40602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40568372 - 40568628
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccca 100  Q
    ||||||||||||||  ||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  40568372 gtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgcttgtttatgaattcatttcca 40568471  T
Q  101 atggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggc 200  Q
    | || ||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  40568472 acggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaactgctggagtcctggc 40568571  T
Q  201 atacttacattctgcagcttctactccaatcattcatagagatataaaatctacaaa 257  Q
    ||||||||| ||||| ||||| || |||||||| ||||||||| | |||||||||||    
T  40568572 atacttacactctgcggcttcaacaccaatcatacatagagatgtgaaatctacaaa 40568628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 40597776 - 40598016
Alignment:
Q  17 aaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatggaactgtttacga 116  Q
    ||||||||||||| |||||||||| | || | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||    
T  40597776 aaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaatggtacagtttatga 40597875  T
Q  117 tcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggcatacttacattctgca 216  Q
     ||| ||||||| |||||| |||||| |||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||     
T  40597876 gcatattcatgaccaaaacgaatctagaaagcttacatggaaaacaagattgagaatagcaaaagaaactgctggagtcctggcatacttacattctgct 40597975  T
Q  217 gcttctactccaatcattcatagagatataaaatctacaaa 257  Q
    ||||| || |||||||| ||||||||| | |||||||||||    
T  40597976 gcttccacaccaatcatacatagagatgtcaaatctacaaa 40598016  T

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Target: chr3; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40579430 - 40579686
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccca 100  Q
    |||||| |||||||  ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||    
T  40579430 gtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtttacgaatttattccca 40579529  T
Q  101 atggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggc 200  Q
    |||| |||||||| || |||||||||||| ||| ||||||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||| ||  ||||    
T  40579530 atggtactgtttatgagcatcttcatgatgaaacccaatctatgaagcttacatggaaaacaagattaagaatagcaaaggaagctgctggtgtgctggc 40579629  T
Q  201 atacttacattctgcagcttctactccaatcattcatagagatataaaatctacaaa 257  Q
    ||| ||||| ||||| |||||||| |||||||| ||||||||| | |||||| ||||    
T  40579630 atatttacactctgctgcttctacaccaatcatacatagagatgtgaaatcttcaaa 40579686  T

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Target: chr3; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 40572973 - 40573229
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattccca 100  Q
    |||||||| |||||  ||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  40572973 gtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttagttgtgtatgaatttattccca 40573072  T
Q  101 atggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggc 200  Q
    |||| |||||||| || |||||||||||  ||| ||||||||||||||| |||||||||||||||||||||||  |||||||||  || || ||| ||||    
T  40573073 atggtactgtttatgagcatcttcatgacgaaacccaatctataaagcttacatggaaaacaaggttaagaatttcaaaagaaatagccggtgtcctggc 40573172  T
Q  201 atacttacattctgcagcttctactccaatcattcatagagatataaaatctacaaa 257  Q
    ||||||||| ||||| ||||| || |||||||| ||||||||| | |||||| ||||    
T  40573173 atacttacactctgctgcttcgacaccaatcatacatagagatgtgaaatcttcaaa 40573229  T

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Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 2015348 - 2015105
Alignment:
Q  17 aaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatggaactgtttacga 116  Q
    ||||||||||||||||||||||||   | ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| ||    
T  2015348 aaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtttacgaattcattcccaatggtactgtttatga 2015249  T
Q  117 tcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactgctggagtcttggcatacttacattctgca 216  Q
     ||||||||||||||||| | | || ||||||| |||||||||||||| || ||||||||||||||||||||||||||| | |||||||| ||||||||     
T  2015248 gcatcttcatgatcaaaatccaactttaaagcttacatggaaaacaagattgagaatagcaaaagaaactgctggagtcctagcatacttgcattctgct 2015149  T
Q  217 gcttctactccaatcattcatagagatataaaatctacaaacat 260  Q
    || ||||| |||||||| ||||||||| | |||||| |||||||    
T  2015148 gcatctacaccaatcatacatagagatgtgaaatcttcaaacat 2015105  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 11845091 - 11845187
Alignment:
Q  8 ttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatgg 104  Q
    |||||||  |||||||| ||||||||||||| |  || || || |||||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  11845091 ttctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcctaatgg 11845187  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 11849820 - 11849916
Alignment:
Q  8 ttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatgg 104  Q
    |||||||  |||||||| ||||||||||||| |  || || || |||||||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  11849820 ttctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcctaatgg 11849916  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 11853055 - 11853107
Alignment:
Q  52 tgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatgg 104  Q
    |||||||| |||||| |  ||||||||||| ||||||||||||||| ||||||    
T  11853055 tgttgtttggagacaaatattccattgcttatttatgaattcattctcaatgg 11853107  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14153577 - 14153418
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgttta-gagacagaagttccattgcttgtttatgaattcattccc 99  Q
    ||||||||||||||  |||||||||||| |||||||||||   |||||||||||| |||| ||||||||||||||    |||||||| ||||| ||| |     
T  14153577 gtggtcgttctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatttattgc- 14153483  T
Q  100 aatggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaag 164  Q
    ||||| | ||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  14153482 aatggtattgtttattatcatcttcatgatcaaaaccaatctttaaagcttacatggaaaacaag 14153418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 14023002 - 14022898
Alignment:
Q  88 gaattcattcccaatggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaactg 187  Q
    ||||| ||| ||||||| |||||||| || |||||||||||||||||||||||| ||| ||| |||||||||||||| || |||||||||||||||| ||    
T  14023002 gaatttatttccaatggtactgtttatgagcatcttcatgatcaaaaccaatctttaacgcttacatggaaaacaagattgagaatagcaaaagaaattg 14022903  T
Q  188 ctgga 192  Q
    |||||    
T  14022902 ctgga 14022898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 13765805 - 13765643
Alignment:
Q  12 ttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaattcattcccaatggaactgtt 111  Q
    |||||||||||||| || |||||||||||   ||||| ||||||||||||||||||||||||| || ||| |||| ||||| ||||| || |  | ||||    
T  13765805 ttctaaaatcaaccgta-aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaatttattcctaacgatattgtt 13765707  T
Q  112 tacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatag 175  Q
    || |  ||| || ||||||||| ||||||| ||| ||| |||||||||||||| || |||||||    
T  13765706 tatgcgcatattaatgatcaaagccaatctttaatgcttacatggaaaacaagattgagaatag 13765643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 14155123 - 14155228
Alignment:
Q  81 tgtttatgaattcattcccaatggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaa 180  Q
    |||||| ||||| |||| |||||| |||||||  || |||||||||||||||||||||||| ||||||| || ||||| |||||  | ||||| ||||||    
T  14155123 tgtttacgaatttattctcaatggtactgtttttgagcatcttcatgatcaaaaccaatctttaaagcttacttggaatacaagaatgagaatggcaaaa 14155222  T
Q  181 gaaact 186  Q
    ||||||    
T  14155223 gaaact 14155228  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 14023234 - 14023372
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttg-ttgtttagagacagaagttccattgcttgtttatgaattcattccc 99  Q
    |||||||||||||| |||||||| |||| ||||||||| |   |||||||||| || |||| ||||||||||||  || |||||||||||||| |||  |    
T  14023234 gtggtcgttctttccaaaatcaatcatataaatgtggtgattcttttgggttgtttttttaaagacagaagttctcttacttgtttatgaatttatt-gc 14023332  T
Q  100 aatggaactgtttacgatcatcttcatgatcaaaaccaat 139  Q
    ||||| ||| ||||  ||||| ||||||||||||| ||||    
T  14023333 aatggtactctttagtatcattttcatgatcaaaagcaat 14023372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 1868413 - 1868504
Alignment:
Q  1 gtggtcgttctttctaaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtttatgaatt 92  Q
    ||||| ||||| ||| |||| || ||||| ||||| || | | | ||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  1868413 gtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt 1868504  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 1842849 - 1842895
Alignment:
Q  46 ttgggttgttgtttagagacagaagttccattgcttgtttatgaatt 92  Q
    ||||| ||||||||||||||||||||||| ||| | |||||||||||    
T  1842849 ttggggtgttgtttagagacagaagttcctttgttggtttatgaatt 1842895  T

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