View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9285_low_8 (Length: 220)
Name: NF9285_low_8
Description: NF9285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9285_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37111353 - 37111153
Alignment:
| Q |
1 |
gcttcagcagcaagagccaaaatatcagcacaagacacgacagaaggacatgaattttcaacagaggttttgattttgtcaactacatcaaagccacgag |
100 |
Q |
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| T |
37111353 |
gcttcagcagcaagagccaaaatatcagcacaagacacgacagaaggacatgaattttcaacagaggttttgattttgtcaactacatcaaagccacgag |
37111254 |
T |
|
| Q |
101 |
ctgaattattgttaggaacagcatttttctcacttagtgttatgtttccaccttgatctaataaaagagatgcatcacatccctgcaatacacaaattaa |
200 |
Q |
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| T |
37111253 |
ctgaattattgttaggaacagcatttttctcacttagtgttatgtttccaccttgatctaataaaagagatgcatcacatccctgcaatacacaaattaa |
37111154 |
T |
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| Q |
201 |
g |
201 |
Q |
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| T |
37111153 |
g |
37111153 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 8361824 - 8361859
Alignment:
| Q |
6 |
agcagcaagagccaaaatatcagcacaagacacgac |
41 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8361824 |
agcagcaagagccaaaatatcagcacaagacacgac |
8361859 |
T |
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