View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_high_4 (Length: 492)
Name: NF9286_high_4
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 229 - 477
Target Start/End: Complemental strand, 10772027 - 10771761
Alignment:
| Q |
229 |
atttttaacaatttgttgattatattagtcgacaatgataaataatagttatattctcccttgttatattattagggatatcaaatcctcatgtaatttg |
328 |
Q |
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| T |
10772027 |
atttttaacaatttgttgattatattagtcgacaataataaataatagttatattctcccttgttatattattagggatatcaaatccacatgtaatttg |
10771928 |
T |
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| Q |
329 |
t-tata-----ttac---------taagaaactga---atttgtcagtttcggtcagaataagaactactattgcagtaaatgtgataatcggtgctctt |
410 |
Q |
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| T |
10771927 |
tgtacaacttcttaaacggtaatttaagaaactgatcaatttgtcagtttcggtcaaaataagaactactgttgcagtaaatgtgataattggtgctctt |
10771828 |
T |
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| Q |
411 |
tggaacattagattgctcaaagagcatcagatgctttgttaaaaccattagattgttttgtttattc |
477 |
Q |
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| T |
10771827 |
tggaacattagattgctcaaatagcatcagatgctttgttagaaccattagattgttttgtttattc |
10771761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 10772578 - 10772395
Alignment:
| Q |
1 |
aatctccaaggaatacgttgttagaataaaacaaaa--tcagagtttttaaaatttttggaatttcgcaatcatattttttacaaatttccagagcataa |
98 |
Q |
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|||| |||||||||||||||||||||||||| |||| |||||||||||||||||| || ||| | ||||||||||||||||||||||||| |||||||| |
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| T |
10772578 |
aatccccaaggaatacgttgttagaataaaaaaaaaaatcagagtttttaaaatttctgaaatattgcaatcatattttttacaaatttcccgagcataa |
10772479 |
T |
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| Q |
99 |
atcattgaaactttattaaac-aaaatcctaagaatatgtttggatgactaaatttaaataggtaacacaatttttcagggaat |
181 |
Q |
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| T |
10772478 |
atcattgaaactttattaaacaaaaatcttaagaatatgtttggatgaataaatttaaataggtaacacaatttttcagggaat |
10772395 |
T |
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