View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_10 (Length: 475)
Name: NF9286_low_10
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 35095850 - 35095396
Alignment:
| Q |
16 |
cattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagattctctccttaaatttaaaaactctcttcaaaa |
115 |
Q |
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| T |
35095850 |
cattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagattctctccttaaatttaaaaactctcttcaaaa |
35095751 |
T |
|
| Q |
116 |
caccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggcgttctttgttacaaaggacatgtttgg |
215 |
Q |
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| T |
35095750 |
caccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggcgggcgttctttgttacaaaggacatgtttgg |
35095651 |
T |
|
| Q |
216 |
ggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttaatgaacaaccaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095650 |
ggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtatatcagaaccattagcttaatgaacaaccaat |
35095551 |
T |
|
| Q |
316 |
tcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctctggcgagattccagcagaggcgtttca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35095550 |
tcgataccacatggccaggcctaaacaaactcaccggtcttaagaacatttacctttctaataataaattctctggcgagattccagcagaggcgtttca |
35095451 |
T |
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| Q |
416 |
agcgatgcagtggctgaagaaaatttatctcgacaataatcagttctctgctcct |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
35095450 |
agcgatgcagtggctgaagaaaatttatctcgacaataatcagttcactggtcct |
35095396 |
T |
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