View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_15 (Length: 433)
Name: NF9286_low_15
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 51036621 - 51037021
Alignment:
| Q |
20 |
ccactaaagtcccccaaaactaaatccaatggtttcaatcaaatcaatttctaaattttgttgctgcgaatagattgaagtttgaacagaagctaaatct |
119 |
Q |
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| T |
51036621 |
ccactaaagtcccccaaaactaaatccaatggtttcaatcaaatcaatttctaaattttgttgctgcgaatagattgaagtttgaacagaagctaaatct |
51036720 |
T |
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| Q |
120 |
tttccataaataacatagtgcaatccataggacataatctatgcatcacacacattttagattgaacaccagttagctgtcgtacatgttgtctgacata |
219 |
Q |
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| T |
51036721 |
tttccataaataacatagtgcaatccataggacataatctatgcatcacacacattttagattgaacaccagttagctgtcgtacatggtgtctgacata |
51036820 |
T |
|
| Q |
220 |
tgttagtattctacactaattaacacgaaactaaccaatacacgtagttacatttagctacttttaatttctataattttatctttgtttatgtgtcgta |
319 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51036821 |
tgttagtattctacactaattaacacgatactaaccaatacacgtagttacatttagctacttttaatttctataattttatctttgtttatgtgtcgta |
51036920 |
T |
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| Q |
320 |
tctggtgtttgtgccagtacttcatagattagaactaaaagaaagttaagtgaagtnnnnnnngcaaatcaatacatacatcacgataggtgttgatgtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
51036921 |
tctggtgtttgtgccagtacttcatagattagaactaaaagaaagttaagtgaagtaaaaaaagcaaatcaatacatacatcacaataggtgtttatgtc |
51037020 |
T |
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| Q |
420 |
c |
420 |
Q |
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| T |
51037021 |
c |
51037021 |
T |
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