View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_16 (Length: 357)
Name: NF9286_low_16
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 19178598 - 19178273
Alignment:
| Q |
14 |
ttatactgcacaaattcgtccccaaccaaccagtacccgtgcggatgcatggatatcttactggtacaatttagaaaggctattcaacaatgacatcaaa |
113 |
Q |
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| T |
19178598 |
ttatactacacaaattcgtccctgaccaactagtacccgtgcggatgcatgggtatcttactagtacaatttagaaaggctattcaacaatgacatcaaa |
19178499 |
T |
|
| Q |
114 |
ctcatgactatagccgatgcagttgatgccccaaaaattgagcatggattcaaagtttatatgtaaaaagataataacaatagcaaaatgccaataacac |
213 |
Q |
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| T |
19178498 |
ctcatgactatagctgatgcagttgatgtcccaaaaattgagcatggattctgagtttatatgtaaaaagataataacaatagaaaaataccaataacac |
19178399 |
T |
|
| Q |
214 |
tagatatttgtgtcataacactctctattgccatgatcggcgcaaaggctaacaatacaaaaatattgaagtaaataagaaacataatttcatatgaata |
313 |
Q |
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| T |
19178398 |
cagatatttgtgtcataacgctctctattgccatgatcggtgcaaagactaacaatacaaaaatactgaagtaaataagaaacatcatttcatatgaata |
19178299 |
T |
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| Q |
314 |
aacattcaatttaatcgctaaactat |
339 |
Q |
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| T |
19178298 |
aacattcaatttaatcgctaaactat |
19178273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 78 - 335
Target Start/End: Complemental strand, 19173501 - 19173242
Alignment:
| Q |
78 |
tacaatttagaaaggctattcaacaatgacatcaaactcatgactatagccgatgcagttgatgccccaaaaattgagcatggattcaaagttta--tat |
175 |
Q |
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| T |
19173501 |
tacaatttagaaaggctattcaacaatgacatcaaactcatgactatagctgatgtagttgatgtcccagaaattgagcatggattctgagtttaagttt |
19173402 |
T |
|
| Q |
176 |
gtaaaaagataataacaatagcaaaatgccaataacactagatatttgtgtcataacactctctattgccatgatcggcgcaaaggctaacaatacaaaa |
275 |
Q |
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| T |
19173401 |
gtaaaaagataataacaatagcaaaatgccaataacactagatatttgtgtcataacactctctattgccatgatcgacgcaaaggttaacaatacagaa |
19173302 |
T |
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| Q |
276 |
atattgaagtaaataagaaacataatttcatatgaataaacattcaatttaatcgctaaa |
335 |
Q |
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| T |
19173301 |
atattgaagtaaataagaaacatcatttcatatgaataaacattcaatttaatctctaaa |
19173242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 5325810 - 5325870
Alignment:
| Q |
15 |
tatactgcacaaattcgtccccaaccaaccagtacccgtgcggatgcatggatatcttact |
75 |
Q |
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|||||| || |||||||||| | || |||||||||||||||||||||| || ||| ||||| |
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| T |
5325810 |
tatactacataaattcgtcctcgactaaccagtacccgtgcggatgcacgggtatgttact |
5325870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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