View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9286_low_19 (Length: 327)

Name: NF9286_low_19
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9286_low_19
NF9286_low_19
[»] chr5 (18 HSPs)
chr5 (12-319)||(26072536-26072843)
chr5 (23-314)||(27166152-27166444)
chr5 (21-314)||(18089959-18090254)
chr5 (48-314)||(32228452-32228719)
chr5 (129-314)||(17106569-17106754)
chr5 (48-314)||(33169306-33169573)
chr5 (244-312)||(18148160-18148228)
chr5 (194-314)||(18359462-18359582)
chr5 (253-313)||(24407602-24407662)
chr5 (47-163)||(33385598-33385714)
chr5 (267-312)||(8300627-8300672)
chr5 (46-163)||(25857647-25857764)
chr5 (264-309)||(27766696-27766741)
chr5 (264-312)||(10774101-10774149)
chr5 (244-314)||(42927779-42927849)
chr5 (78-163)||(27766843-27766928)
chr5 (264-305)||(33385816-33385857)
chr5 (246-314)||(8941832-8941900)
[»] chr3 (23 HSPs)
chr3 (21-319)||(17098074-17098373)
chr3 (87-314)||(15312230-15312459)
chr3 (87-314)||(16178596-16178824)
chr3 (115-314)||(50651640-50651840)
chr3 (21-314)||(963361-963655)
chr3 (48-314)||(3140500-3140767)
chr3 (47-161)||(29523969-29524083)
chr3 (47-163)||(12342449-12342565)
chr3 (47-163)||(36801299-36801415)
chr3 (264-314)||(11310641-11310691)
chr3 (264-312)||(11203469-11203517)
chr3 (47-163)||(33496347-33496463)
chr3 (21-163)||(7031215-7031357)
chr3 (264-314)||(19890326-19890376)
chr3 (264-314)||(48570481-48570531)
chr3 (267-312)||(7031462-7031507)
chr3 (264-309)||(29524187-29524232)
chr3 (264-312)||(33496197-33496245)
chr3 (255-309)||(12342660-12342714)
chr3 (264-306)||(30695785-30695827)
chr3 (264-306)||(36801517-36801559)
chr3 (264-310)||(53184979-53185025)
chr3 (47-148)||(26771213-26771314)
[»] chr2 (20 HSPs)
chr2 (156-312)||(15391793-15391950)
chr2 (21-319)||(15917296-15917596)
chr2 (185-314)||(42563113-42563243)
chr2 (264-314)||(12645184-12645234)
chr2 (264-314)||(40176318-40176368)
chr2 (264-314)||(44473006-44473056)
chr2 (47-160)||(11000174-11000287)
chr2 (248-313)||(28252370-28252435)
chr2 (266-314)||(3400632-3400680)
chr2 (264-312)||(33516226-33516274)
chr2 (47-134)||(42563267-42563354)
chr2 (251-314)||(44023010-44023073)
chr2 (266-306)||(13059580-13059620)
chr2 (194-314)||(38604745-38604865)
chr2 (248-314)||(17765388-17765454)
chr2 (267-312)||(11000395-11000440)
chr2 (267-312)||(14439403-14439448)
chr2 (272-308)||(16241529-16241565)
chr2 (272-308)||(17569007-17569043)
chr2 (266-306)||(36930841-36930881)
[»] scaffold0161 (1 HSPs)
scaffold0161 (104-314)||(6290-6501)
[»] chr6 (22 HSPs)
chr6 (19-314)||(18682701-18682998)
chr6 (21-312)||(17330621-17330904)
chr6 (227-313)||(12429037-12429123)
chr6 (21-314)||(20883231-20883522)
chr6 (115-314)||(13937348-13937548)
chr6 (47-163)||(21630333-21630449)
chr6 (47-163)||(15959037-15959154)
chr6 (47-163)||(17606558-17606674)
chr6 (264-314)||(11462063-11462113)
chr6 (260-314)||(14373429-14373483)
chr6 (21-163)||(17579279-17579421)
chr6 (82-163)||(215203-215284)
chr6 (264-309)||(10929746-10929791)
chr6 (264-309)||(17606776-17606821)
chr6 (21-161)||(17573853-17573993)
chr6 (255-314)||(15959247-15959306)
chr6 (264-306)||(215059-215101)
chr6 (106-160)||(12427970-12428024)
chr6 (244-314)||(24767846-24767916)
chr6 (248-314)||(32536543-32536609)
chr6 (264-314)||(33185084-33185134)
chr6 (67-148)||(11462228-11462309)
[»] chr4 (19 HSPs)
chr4 (21-314)||(48242027-48242319)
chr4 (21-314)||(19740238-19740532)
chr4 (87-314)||(5790356-5790580)
chr4 (21-314)||(46145323-46145617)
chr4 (47-163)||(4548443-4548559)
chr4 (264-314)||(55726035-55726085)
chr4 (47-163)||(8360900-8361016)
chr4 (264-314)||(5148309-5148359)
chr4 (19-148)||(7403728-7403857)
chr4 (21-309)||(20002371-20002660)
chr4 (194-314)||(17402058-17402178)
chr4 (255-314)||(11587631-11587690)
chr4 (264-314)||(36223531-36223581)
chr4 (264-314)||(54483601-54483651)
chr4 (264-309)||(12697466-12697511)
chr4 (47-163)||(12697613-12697729)
chr4 (251-314)||(2822466-2822529)
chr4 (264-312)||(8360750-8360798)
chr4 (272-308)||(14137328-14137364)
[»] chr1 (15 HSPs)
chr1 (14-314)||(2490860-2491161)
chr1 (107-314)||(4646342-4646550)
chr1 (194-314)||(6478167-6478292)
chr1 (264-312)||(28351376-28351424)
chr1 (264-314)||(37192369-37192419)
chr1 (248-314)||(47623491-47623557)
chr1 (47-163)||(43388167-43388283)
chr1 (267-312)||(16918254-16918299)
chr1 (263-312)||(23635163-23635212)
chr1 (270-314)||(37297947-37297991)
chr1 (108-163)||(23635008-23635063)
chr1 (263-312)||(23713832-23713881)
chr1 (264-305)||(43388024-43388065)
chr1 (21-161)||(16918007-16918147)
chr1 (266-306)||(30713323-30713363)
[»] chr8 (21 HSPs)
chr8 (116-312)||(12257740-12257941)
chr8 (116-312)||(12265132-12265333)
chr8 (264-314)||(2529534-2529584)
chr8 (47-163)||(37433932-37434048)
chr8 (251-314)||(25090035-25090098)
chr8 (264-314)||(13199771-13199821)
chr8 (21-160)||(2170143-2170282)
chr8 (260-314)||(34137401-34137455)
chr8 (267-312)||(2169990-2170035)
chr8 (267-312)||(20823946-20823991)
chr8 (47-160)||(34137187-34137300)
chr8 (266-306)||(136574-136614)
chr8 (47-159)||(17699286-17699398)
chr8 (266-306)||(18309362-18309402)
chr8 (21-312)||(43270100-43270392)
chr8 (21-100)||(5181533-5181612)
chr8 (21-163)||(20824096-20824238)
chr8 (264-306)||(37433788-37433830)
chr8 (246-314)||(5181317-5181385)
chr8 (264-304)||(17699140-17699180)
chr8 (266-306)||(25890718-25890758)
[»] chr7 (5 HSPs)
chr7 (249-319)||(48394547-48394617)
chr7 (21-314)||(37254406-37254700)
chr7 (16-163)||(18530310-18530457)
chr7 (264-314)||(25619107-25619157)
chr7 (267-312)||(18530160-18530205)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 26072843 - 26072536
Alignment:
Q  12 atggacatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggtta 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  26072843 atggacatcaatcatctgtttctgtcttgtccttcttttggtgcgttgtggccattggtgtggtcatggctcggtgttgaaggggtcgaatctcaggtta 26072744  T
Q  112 tttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtc 210  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  26072743 tttcagaccatttcttgcaatttattcattatgcaggcggtttgaaatcgcggca-tcgttttttcaccttatatggctcctgtgtgtttggattttgtc 26072645  T
Q  211 gaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 310  Q
    ||||||||||||||||| ||  |||||||||| |||||  || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26072644 gaatgatcggaacgacaagtcattcaggaacaaacaaaattccctaccgaaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 26072545  T
Q  311 aatgatgtc 319  Q
    |||| ||||    
T  26072544 aatgttgtc 26072536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 27166152 - 27166444
Alignment:
Q  23 tcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccat 122  Q
    |||| |||||||||||| |||  |||| || ||||||||||  ||| || || |||| |||||| |||||||||| || | ||||||||||||||| ||     
T  27166152 tcatttgtttctgtcttgtccaactttcggcgcgttgtggcagttgatgcgggcatgacttggttttgaaggggtggactctcaggttatttcagatcac 27166251  T
Q  123 tttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttggattttgtcgaatgatcgga 221  Q
    || |||||||||  | |||||||||| ||| | |||||||| |  || ||||||||||| |||||||||||| |||||||| | |||| |||||| |  |    
T  27166252 ttcttgcaatttagtaattatgcaggtggtataaaatcgcgacgatcattttttcacctgatatggctcctttgtgtttgggtattgtggaatgaacaaa 27166351  T
Q  222 acgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |  ||||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27166352 ataacaggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatg 27166444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 18089959 - 18090254
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||||||||| ||||||  ||   |||||| ||||||||||| |||||  ||   ||||| |||||||| ||||  ||   ||||||||||||| |||    
T  18089959 aatcatctgtttttgtcttgcccggtttttggagcgttgtggcctttggttagggattggctcggtgttgagggggcggagagtcaggttatttcatacc 18090058  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgtttttt-caccttatatggctcct-tgtgtttggattttgtcgaatgatc 218  Q
    | || ||||||||| ||||||||||||| | | | |||||||||| |||||||||| || |  || |||||  | ||||||||| |||||| ||| ||||    
T  18090059 acttcttgcaatttattcattatgcaggtgatcttaaatcgcggcgttcgtttttttcatcagatttggcttttgtgtgtttgggttttgtggaaagatc 18090158  T
Q  219 ggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
     |||||||| ||| |||||||| || || |||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| ||||||    
T  18090159 agaacgacaagttattcaggaatactcatagctctttaccgcatatgttagataaagtaaaatcctattcattgtggtggttgaaggctggtaatg 18090254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 32228719 - 32228452
Alignment:
Q  48 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 147  Q
    ||||||||||||||||| |||||| |  | ||||| |||||||  ||| || |   |||| ||||  |||| ||||| ||||||||| || |||||||||    
T  32228719 tttggtgcgttgtggccgttggtgcgagcttggctaggtgttgttgggatcaagactcagtttataacagatcatttcttgcaatttattaattatgcag 32228620  T
Q  148 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 246  Q
    |  |||||| | |||| | ||| ||||| || || || |||||||| |||||||||||||||| || ||| ||||| || |   | ||||| || | |||    
T  32228619 gttgtttgagagcgcgacgttcctttttccatctaatttggctcctgtgtgtttggattttgtggactgagcggaatgataaagttttcagaaataaaca 32228520  T
Q  247 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  32228519 aagctctctaccgcatatgttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatg 32228452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 129 - 314
Target Start/End: Original strand, 17106569 - 17106754
Alignment:
Q  129 caatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctccttgtgtttggattttgtcgaatgatcggaacgacag 228  Q
    |||||| |||||||||| || |||||| ||||||||   || |||||||||||||| | |||||||||||||||||| | | |||| |||| || |||||    
T  17106569 caatttattcattatgctggtggtttgcaatcgcggagatcattttttcaccttatttagctccttgtgtttggattatttggaataatcgcaatgacag 17106668  T
Q  229 gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| || || || | |||||| |||||||| ||| ||||||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  17106669 gttatttagaaataaacaaagttctctaccacaactgttagataaagttaaatcctatttgttgtggtggttgaaagatagtaatg 17106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 33169573 - 33169306
Alignment:
Q  48 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 147  Q
    |||| ||||||||||||  ||||| |  | |||||||||||||  || ||||||  |||| | ||  ||||||||||| |||||||| || |||||||||    
T  33169573 tttgatgcgttgtggccgatggtgcgagcttggcttggtgttgttggagtcgaaactcagttcataacagaccattttctgcaatttattaattatgcag 33169474  T
Q  148 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 246  Q
    | ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  33169473 gtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 33169374  T
Q  247 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
     |||||| |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  33169373 tagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 33169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 18148160 - 18148228
Alignment:
Q  244 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||| | || || |||||||||||||||||||| || || |||||||||||||||||||||||    
T  18148160 acaaagctctattccacatatgttagataaagtaaaatcatactctttgtggtggttgaaagctagtaa 18148228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 18359462 - 18359582
Alignment:
Q  194 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 293  Q
    ||||||||| |||| | |||||| ||||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || | ||||    
T  18359462 tgtgtttgggttttatggaatgaacggaatgacaggttatttcggaaccgtcaaagttctataccactattgttagataaagtaaaatcacatactttgt 18359561  T
Q  294 ggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||||    
T  18359562 ggtggttgaaagctagtaatg 18359582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 24407662 - 24407602
Alignment:
Q  253 tctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 313  Q
    |||||||||  |||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  24407662 tctaccgcatttgttagataaagtaaaatcttattccttgtagtggatgagagctagtaat 24407602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 33385598 - 33385714
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||| | || || | ||| | ||| ||||| |||||| |||||||| || |||||| |    
T  33385598 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaatgagtagattctcatgctatctcagatcattttgtgcaatttattgattatgta 33385697  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || || |||||||||||    
T  33385698 ggtggcttgaaatcgcg 33385714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 8300627 - 8300672
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  8300627 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 8300672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 25857647 - 25857764
Alignment:
Q  46 cttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 145  Q
    |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | |||||    
T  25857647 cttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgc 25857746  T
Q  146 aggcggtttgaaatcgcg 163  Q
    ||| || |||||||||||    
T  25857747 aggtggcttgaaatcgcg 25857764  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 27766741 - 27766696
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  27766741 tgttagataaagtaaaatcgaataccttgtggtggttgaaagctag 27766696  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 10774149 - 10774101
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||  || ||||||||||||||||||| |||||    
T  10774149 tgttagataaagtaaaatcaaataccttgtggtggttgaaagccagtaa 10774101  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 42927849 - 42927779
Alignment:
Q  244 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  42927849 acaaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgtaatg 42927779  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 27766928 - 27766843
Alignment:
Q  78 tggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | |||||||| | ||||||||||||    
T  27766928 tggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgcaggtgttttgaaatcgcg 27766843  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 33385816 - 33385857
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaag 305  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  33385816 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 33385857  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 8941832 - 8941900
Alignment:
Q  246 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||| |||||||  | ||| ||||| ||||||| | | ||||||||||| |||||||||||||||    
T  8941832 aaagctctttaccgcatttattacataaattaaaatcatgtaccttgtggtggctgaaagctagtaatg 8941900  T

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Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 17098074 - 17098373
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||||||||||| |||| ||| |||||||||||||||||| | ||||||  |  |||||| ||||||||||||||||||| ||| |||||||||||||    
T  17098074 aatcatctgtttctatcttgtccatcttttggtgcgttgtggtcgttggtgcagatatggctcggtgttgaaggggtcgaatctcaagttatttcagacc 17098173  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||| ||||||||| ||||||| ||||| ||||||||||| | |   ||||||||| |||||||||||| ||| ||||||||| |||||| |||||||||    
T  17098174 atttcttgcaatttattcattacgcaggtggtttgaaatcacagatatcgttttttgaccttatatggcccctatgtgtttgggttttgtggaatgatcg 17098273  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 319  Q
    ||| |||||||| |||||||| | |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  17098274 gaatgacaggttattcaggaataaacaaagatctctaccgcatatgttagatgaagtaaaatcatattccttgtggtggttgaaatctagtaaagatgtc 17098373  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 87 - 314
Target Start/End: Complemental strand, 15312459 - 15312230
Alignment:
Q  87 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcgg----cattcgttttttcacctt 182  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||| | |||||||||||||||    ||||  ||||||||||||    
T  15312459 gttgaaggggtcgaatctcaggttatttcagaccatttctcgcaatttattcattatgcatgtggtttgaaatcgcggagatcatt--ttttttcacctt 15312362  T
Q  183 atatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaat 281  Q
    ||| ||||||| ||||||||| |||||| |||||||||||| | || ||| || ||||| |  |||||||| |||||  | |||||||||||| ||||||    
T  15312361 ataaggctcctatgtgtttgggttttgtggaatgatcggaatg-caagttatttaggaataagcaaagctcactaccatatatgttagataaactaaaat 15312263  T
Q  282 cttattccttgtggtggttgaaagctagtaatg 314  Q
    | |||||||||||||||||||||||||||||||    
T  15312262 catattccttgtggtggttgaaagctagtaatg 15312230  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 87 - 314
Target Start/End: Complemental strand, 16178824 - 16178596
Alignment:
Q  87 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 186  Q
    ||||||||||| |||| ||| ||||| ||||||||||| | ||||||| | |||||| | || |||||||||||| ||   || ||||||||| |||| |    
T  16178824 gttgaaggggttgaatctcaagttatctcagaccatttctcgcaatttatccattatactggtggtttgaaatcgtggatatcattttttcactttattt 16178725  T
Q  187 ggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 285  Q
    ||||||| |||||||||||| | | |||||||||||| |||||||| || ||||||| ||||||||||| ||| | ||||||| ||||||| ||||  ||    
T  16178724 ggctcctatgtgtttggattatttggaatgatcggaatgacaggttatttaggaacaaacaaagctctcaaccactaatgttatataaagttaaattcta 16178625  T
Q  286 ttccttgtggtggttgaaagctagtaatg 314  Q
    ||| |||||||||||||||||||||||||    
T  16178624 ttcattgtggtggttgaaagctagtaatg 16178596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 314
Target Start/End: Original strand, 50651640 - 50651840
Alignment:
Q  115 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 213  Q
    ||||||||| |||||| ||| || |||||||||| ||||||| | | || |  || |||||||| || || ||||| || ||||||||||| |||| |||    
T  50651640 cagaccattgtttgcagtttattaattatgcaggtggtttgagagcacgacggtctttttttcatctaatttggctgctgtgtgtttggatattgtggaa 50651739  T
Q  214 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 313  Q
    ||| ||||| || ||  | ||||| || |  || || ||| |||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50651740 tgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttgttaggtaaagtaaaatcttattccttgtggtggttgaaagctagtaat 50651839  T
Q  314 g 314  Q
    |    
T  50651840 g 50651840  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 963361 - 963655
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||||| ||| |||||| ||| |  |||| ||||||||||||  ||||| |  | ||||||||| |||  || ||||||  |||| | ||  ||||||    
T  963361 aatcatctatttttgtcttgtccgtactttgatgcgttgtggccgatggtgcgagcttggcttggtcttgttggagtcgaaactcagttcataacagacc 963460  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||||||||||||| || |||||| ||| ||| ||| | | |||| ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||    
T  963461 attttttgcaatttattaattatgtaggtggtatgagagcacggcgttcctttttccatctaatttggcttctgtgtgtttggatattgtggaatgagcg 963560  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| || ||  | |||   || | | | |||||| |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||||||    
T  963561 gaatgatagagttttccaaaataaatatagctctttaccgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaatg 963655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 314
Target Start/End: Complemental strand, 3140767 - 3140500
Alignment:
Q  48 tttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcag 147  Q
    |||||||||||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||   ||||||||||||||||||| || |||||||||    
T  3140767 tttggtgcgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataaaagaccattttttgcaatttattaattatgcag 3140668  T
Q  148 gcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacaca 246  Q
    | | ||||| | | |  | ||| ||||| || || || ||||| || ||||||||||| |||| |||||| ||||| || ||  | ||| | || | | |    
T  3140667 gtgatttgagagcacaacgttcttttttccaactaatttggcttctgtgtgtttggatattgtggaatgagcggaatgatagagttttccgaaataaata 3140568  T
Q  247 aagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||| |||||||  ||||||||||||||||||| | || ||||| |||  |||||||||||||||    
T  3140567 aagctctttaccgcatttgttagataaagtaaaatcatgtttcttgtcgtgactgaaagctagtaatg 3140500  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 29523969 - 29524083
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| ||||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  29523969 ttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctcataatatctcagatcattttgtgcaatttattgaatatgca 29524068  T
Q  147 ggcggtttgaaatcg 161  Q
    || ||||||||||||    
T  29524069 ggtggtttgaaatcg 29524083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 12342449 - 12342565
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||| |||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  12342449 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaagaggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 12342548  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  12342549 ggtggtttgaaatcgcg 12342565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 36801299 - 36801415
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  36801299 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 36801398  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || || |||||||||||    
T  36801399 ggtggcttgaaatcgcg 36801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 11310641 - 11310691
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  11310641 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagcaatg 11310691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 11203517 - 11203469
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||    
T  11203517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 11203469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 33496463 - 33496347
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||  |||||| |||||||| || | ||||||    
T  33496463 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagctcattttgtgcaatttattgaatatgca 33496364  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || | ||||||||||||    
T  33496363 ggtgatttgaaatcgcg 33496347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 7031215 - 7031357
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  7031215 aatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatc 7031314  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    | ||| |||||||| || | |||||||| || |||||||||||    
T  7031315 actttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 7031357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 19890376 - 19890326
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  |  |||||||||||||||||||||||||||    
T  19890376 tgttagataaagtaaaatcacacaccttgtggtggttgaaagctagtaatg 19890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 48570481 - 48570531
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  ||||| |||||||||||||||||| |||||    
T  48570481 tgttagataaagtaaaatcaaattccctgtggtggttgaaagctaataatg 48570531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 7031462 - 7031507
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  7031462 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 7031507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 29524187 - 29524232
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  29524187 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 29524232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 33496245 - 33496197
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||||    
T  33496245 tgttagataaagtaaaatcaaataccttgtggtggttgaaagttagtaa 33496197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 12342660 - 12342714
Alignment:
Q  255 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||| | |||||||||||||||||||  || |||||| |||||||||||||||    
T  12342660 taccgctattgttagataaagtaaaatcaaataccttgtagtggttgaaagctag 12342714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 30695785 - 30695827
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  30695785 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 30695827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 36801517 - 36801559
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  36801517 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 36801559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 310
Target Start/End: Original strand, 53184979 - 53185025
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 310  Q
    |||||||||||||||||||  || |||||||||||||||||| ||||    
T  53184979 tgttagataaagtaaaatcacataccttgtggtggttgaaagttagt 53185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 26771213 - 26771314
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    |||| |||| || |||||||||||| || | ||| |||| ||||||||||| ||   ||||  |||||| ||| |||||||||||||| ||||||| |||    
T  26771213 ttttagtgccttatggccattggtgagggcttggtttggggttgaaggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgca 26771312  T
Q  147 gg 148  Q
    ||    
T  26771313 gg 26771314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 15391950 - 15391793
Alignment:
Q  156 aaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctc 254  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||||    
T  15391950 aaatcggggcgttcgttttttcaccttatatggctcctgtgtgtttgggttttgtggaatgatcggaacgacaggttgtttaggaacaaacaaagctctc 15391851  T
Q  255 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15391850 taccgcaattgttagataaagttaaatcttattccttgtggtggttgaaagctagtaa 15391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 15917596 - 15917296
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| |||  ||||||| ||||||||||||||||||  | |||||||  |||||| ||||||||  | ||||| |||||||||||    
T  15917596 aatcatatgtttttgtcttgtccaacttttggcgcgttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctcaggctatttcagacc 15917497  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaa-tcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatc 218  Q
    |||||||||||||| ||||||||||||| || | |||| ||||| |  || ||||| ||| |  | || || |  ||||||||| |||||| |||||| |    
T  15917496 attttttgcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggttttgtggaatgaac 15917397  T
Q  219 ggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgt 318  Q
    |||| |||||  | || ||||| | |||||||||| |||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||    
T  15917396 ggaatgacagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtggttgaaagctagtaatgttgt 15917297  T
Q  319 c 319  Q
    |    
T  15917296 c 15917296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 42563243 - 42563113
Alignment:
Q  185 atggctcct-tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatct 283  Q
    ||||||||| ||| ||||| |||||| ||||||  |||| || ||  | |||||||| | ||||| |||||| | ||| |||||| |||||||||||||     
T  42563243 atggctcctctgtatttgggttttgtggaatgagaggaatgatagagttttcaggaataaacaaaactctcttctgcatatgttaaataaagtaaaatca 42563144  T
Q  284 tattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||||||||||||||    
T  42563143 tattccttgtggtggttgaaagctagtaatg 42563113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 12645234 - 12645184
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  12645234 tgttagataaagtaaaatctcataccttgtggtggttaaaagctagtaatg 12645184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 40176368 - 40176318
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  40176368 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaatg 40176318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 44473056 - 44473006
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  44473056 tgttagataaagtaaaatcatattctttgtggtggttgaaagctaataatg 44473006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 11000174 - 11000287
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  11000174 ttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 11000273  T
Q  147 ggcggtttgaaatc 160  Q
    || || ||||||||    
T  11000274 ggtggcttgaaatc 11000287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 28252435 - 28252370
Alignment:
Q  248 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 313  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| ||||||||||||    
T  28252435 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaat 28252370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 3400680 - 3400632
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  3400680 ttagataaagtaaaatcatataccttgtggtggttgaaagctattaatg 3400632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 33516226 - 33516274
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  33516226 tgttagataaagtaaaatcaaattccatgtggtggttgaaagctagtaa 33516274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 42563354 - 42563267
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaattt 134  Q
    |||||||||||||||| | |||||  || | ||||| ||||| | | ||||||| | ||||||||||||||||||||| |||||||||    
T  42563354 ttttggtgcgttgtggtcgttggtccgggcttggctcggtgtagtatgggtcgattctcaggttatttcagaccatttcttgcaattt 42563267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 44023073 - 44023010
Alignment:
Q  251 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||| ||  |||||||||||||||||||  || || ||||||||||||||||||||||||    
T  44023073 tctctaccacagttgttagataaagtaaaatcaaataccctgtggtggttgaaagctagtaatg 44023010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 13059620 - 13059580
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  13059620 ttagataaagtaaagttttattccttgtggtggttgaaagc 13059580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 38604745 - 38604865
Alignment:
Q  194 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 293  Q
    ||||| ||| |||||| |||||| ||||| |||| | | ||||||||   |||||||||| |||| ||  |||| || ||||||||||| |  |  ||||    
T  38604745 tgtgtgtgggttttgtggaatgaacggaatgacacgctattcaggaatcaacaaagctctataccacagttgttggaaaaagtaaaatcatgctttttgt 38604844  T
Q  294 ggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||||    
T  38604845 ggtggttgaaagctagtaatg 38604865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 17765388 - 17765454
Alignment:
Q  248 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||| |||| ||| ||||||| ||||||||||| | ||| |||||| |||| |||||||||||||    
T  17765388 agctctttaccacaattgttagacaaagtaaaatcatcttctttgtgggggttaaaagctagtaatg 17765454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 11000395 - 11000440
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||| |||||| | || |||||||||||||||||||||||||    
T  11000395 tagataaattaaaatttcataccttgtggtggttgaaagctagtaa 11000440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 14439448 - 14439403
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  |  |||||||||||||||||||||||||    
T  14439448 tagataaagtaaaatcacaaaccttgtggtggttgaaagctagtaa 14439403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 16241565 - 16241529
Alignment:
Q  272 aaagtaaaatcttattccttgtggtggttgaaagcta 308  Q
    |||||||| |||||||||||||||||| |||||||||    
T  16241565 aaagtaaagtcttattccttgtggtggctgaaagcta 16241529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 17569007 - 17569043
Alignment:
Q  272 aaagtaaaatcttattccttgtggtggttgaaagcta 308  Q
    |||||||||| |||||| |||||||||||||||||||    
T  17569007 aaagtaaaatattattctttgtggtggttgaaagcta 17569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 36930881 - 36930841
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  36930881 ttagataaagtaaaatactattcattgtggtggttgaaagc 36930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 104 - 314
Target Start/End: Original strand, 6290 - 6501
Alignment:
Q  104 tcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcctt-gtgtttgg 202  Q
    |||| |||||||| |||| || ||||||||| ||||||||||||| | | |||||||||||| |||||| |||||| | || ||| ||||| ||||||||    
T  6290 tcagattatttcaaaccacttcttgcaatttattcattatgcaggtgatctgaaatcgcggcgttcgttctttcacttgatttgggtcctttgtgtttgg 6389  T
Q  203 attttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttga 302  Q
     |||||| |||  |||||||||||||||| |||||||| |  || |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||    
T  6390 gttttgtggaaatatcggaacgacaggttattcaggaataaccatagctctttaccgcatatgttagataaagtaaaatcttattcattgtggtggttga 6489  T
Q  303 aagctagtaatg 314  Q
    ||||||||||||    
T  6490 aagctagtaatg 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 18682701 - 18682998
Alignment:
Q  19 tcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcaga 118  Q
    ||||| |||||||| |||||| ||| | |||||||||| ||||||| |||||   ||| ||||||||  | |  |||||||||| |||||||||||||||    
T  18682701 tcaattatctgtttttgtcttgtccgtattttggtgcgctgtggccgttggttcagtcttggcttggcatagttggggtcgaatctcaggttatttcaga 18682800  T
Q  119 ccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgat 217  Q
    |||||| ||||||||  || |||||||||| ||||||| ||||||    |||||||||||||||||||||||| | ||| ||| | | |||| ||||||     
T  18682801 ccatttcttgcaattcattaattatgcaggtggtttgagatcgcgatgctcgttttttcaccttatatggctcttatgtatttaggtgttgtggaatgag 18682900  T
Q  218 cggaacgacag-gttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    || ||  | || | | |||||||||| ||||||||| |||||||| |||||||||||||||||||| | ||||||||| ||| ||||||| |||||||    
T  18682901 cgaaatcatagagcttttcaggaacaaacaaagctcgctaccgcatatgttagataaagtaaaatcattttccttgtgctggctgaaagcgagtaatg 18682998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 17330904 - 17330621
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| ||  | |||||||||| ||||||| ||| || || ||||||| ||||||| ||    |||   |||||||||||||||||    
T  17330904 aatcatttgtttttgtcttgtcagtattttggtgcgctgtggcctttgatgcgggcatggctcggtgttgcagacaccgagagtcaggttatttcagacc 17330805  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||||||||||||| ||||||||| ||| | | |||  || |||| |||||||||||| ||||| | |||||| ||||||||| |||||| ||| |||||    
T  17330804 attttttgcaatttattcattatgtaggtgttctgacctctcggcgttcgttttttcatcttatttagctcctgtgtgtttgggttttgtggaaggatcg 17330705  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||| ||         |||||| | ||| ||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  17330704 gaatga---------caggaataaacatagctctctatcgcatatgttagataaagtaaaatcatattctttgtggtggttgaaagttagtaa 17330621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 12429037 - 12429123
Alignment:
Q  227 aggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 313  Q
    ||||| || ||||||  |||||||||| |||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  12429037 aggttatttaggaaccaacaaagctctataccacatatgttagataaagtaaaatcatattctttgtggtagttgaaagctagtaat 12429123  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 20883231 - 20883522
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| |||   ||| ||||| ||||||||  ||||| || ||||||||||||| |||||||| || | ||| | ||| |||||||    
T  20883231 aatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcggacatggcttggtgtcgaaggggtagattctcatgctatctcagacc 20883330  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggc-tccttgtgtttggattttgtcgaatgatcg 219  Q
    ||||| |||||||| || | |||||||| || |||||||| || |  || || |||||  | || |||| ||  ||||| ||| |||| | |||  || |    
T  20883331 attttgtgcaatttattgaatatgcaggtggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggttttatggaa--at-g 20883427  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  20883428 gaatgacaggttatttcggaaccgtcaaagttctataccactattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 20883522  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 314
Target Start/End: Complemental strand, 13937548 - 13937348
Alignment:
Q  115 cagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaa 213  Q
    |||||||||||||||||||| || |||||||||| ||| ||| | | || | ||| ||||| || || || |||||  | ||||||||||| |||| |||    
T  13937548 cagaccattttttgcaatttattaattatgcaggtggtatgagagcacgacgttcttttttccatctaatttggcttttgtgtgtttggatattgtggaa 13937449  T
Q  214 tgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaat 313  Q
    ||| ||||| || ||  | |||   || | | | |||||| ||| |||  ||||||||||||||||||| | ||||||||||||| ||||||||||||||    
T  13937448 tgagcggaatgatagagttttccaaaataaatatagctctttactgcatttgttagataaagtaaaatcatgttccttgtggtggatgaaagctagtaat 13937349  T
Q  314 g 314  Q
    |    
T  13937348 g 13937348  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 21630333 - 21630449
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||||||||| |||| | |||||||| || | ||||||    
T  21630333 ttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatttcagatcattgtgtgcaatttattgaatatgca 21630432  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || | ||||||||||||    
T  21630433 ggtgttttgaaatcgcg 21630449  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 15959037 - 15959154
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtg-gtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgc 145  Q
    ||||||||| || |||||||||||| | | | |||||||| |||||||||||  |   ||||  ||||||||||||||||| ||||||||||||||| ||    
T  15959037 ttttggtgccttatggccattggtgagaggcttggcttggggttgaaggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgc 15959136  T
Q  146 aggcggtttgaaatcgcg 163  Q
    |||  | |||||||||||    
T  15959137 aggttgcttgaaatcgcg 15959154  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 17606558 - 17606674
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||| | |||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| || ||| |||||||| || | ||||||    
T  17606558 ttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcactttgtgcaatttattgaatatgca 17606657  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  17606658 ggtggtttgaaatcgcg 17606674  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 11462113 - 11462063
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||| ||||||||||||||  || |||||||||||||||||||||||||||    
T  11462113 tgttggataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 11462063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 14373429 - 14373483
Alignment:
Q  260 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  14373429 caaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 14373483  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 17579279 - 17579421
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  17579279 aatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatc 17579378  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    | ||| |||||||| || | |||||||| || |||||||||||    
T  17579379 actttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 17579421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 215284 - 215203
Alignment:
Q  82 ttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    |||||||||||||||| || | ||| | ||| ||||| |||||| |||||||| || | |||||||| ||||||||||||||    
T  215284 ttggtgttgaaggggtagattttcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggtttgaaatcgcg 215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 10929746 - 10929791
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  10929746 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 10929791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 17606776 - 17606821
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  17606776 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 17606821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 17573853 - 17573993
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  17573853 aatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatc 17573952  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcg 161  Q
    | ||| |||||||| || | |||||||| || |||||||||    
T  17573953 actttgtgcaatttattgaatatgcaggtggcttgaaatcg 17573993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 15959247 - 15959306
Alignment:
Q  255 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||| ||||||||    
T  15959247 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagttagtaatg 15959306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 215101 - 215059
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  215101 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 215059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 12427970 - 12428024
Alignment:
Q  106 aggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatc 160  Q
    ||||||||||||| || || ||||||||| || |||||||||| |||||||||||    
T  12427970 aggttatttcagatcacttcttgcaatttattaattatgcaggtggtttgaaatc 12428024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 24767846 - 24767916
Alignment:
Q  244 acaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||| | || |||||| |||||||||| ||||| | ||| ||||||||||| |||||| ||||||    
T  24767846 acaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaagcttgtaatg 24767916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 32536609 - 32536543
Alignment:
Q  248 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| || |||||||| ||||||| |||||    
T  32536609 agctctttaccacaaatgttagacaaagtaaaatcatcttctttttggtggttaaaagctattaatg 32536543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 33185134 - 33185084
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||||| || || ||| | |||||||||||||||||||||||||    
T  33185134 tgttagataaagtgaattcatatgctttgtggtggttgaaagctagtaatg 33185084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 11462309 - 11462228
Alignment:
Q  67 tggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcagg 148  Q
    ||||| || ||||||||||||| |||||||| || | ||| ||||| ||||| |||||| |||||||| || | ||||||||    
T  11462309 tggtgcgggcatggcttggtgtcgaaggggtagattctcatgttatctcagatcattttgtgcaatttattgaatatgcagg 11462228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 48242319 - 48242027
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    ||||||||||||||| ||| ||| |||| ||||||| | ||| | || ||| || | |||||  | ||||||||||| |||| ||||||||||||||||     
T  48242319 aatcatctgtttctgacttgtccatcttatggtgcgctttggtcgttagtgcgggcgtggctcagagttgaaggggttgaatctcaggttatttcagaca 48242220  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||| | ||||||| | |||||||| || ||||| ||| |||     || ||||| ||||||||||||||||| |||||||||||| | | |||||||||    
T  48242219 atttctcgcaatttatccattatgctggtggtttaaaaccgcatatatcattttt-caccttatatggctcctatgtgtttggattatatggaatgatcg 48242121  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| |||| ||| || | ||||| ||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  48242120 gaatgacatgttatttaagaacaaacaaagctctc-accacatatgttagataaagtaaaatcatattccttgtgttggttgaaagttagtaatg 48242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 19740238 - 19740532
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||||| ||| |||||| |||||  ||||||||||||||| |  ||||| |  | ||||||||||| |  |||||||||  |||| ||||  ||||||    
T  19740238 aatcatctatttttgtcttgtccttactttggtgcgttgtggtcgatggtgcgagcttggcttggtgtggttggggtcgaaactcagtttatagcagacc 19740337  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||| || |||||| || |||||| ||| ||||||| | |||  ||||| |||||  | || || |||||| | |||||||||||||||| |||||| ||    
T  19740338 atttcttacaatttattaattatgtaggtggtttgagagcgcatcattcctttttctatctaatttggctcttgtgtgtttggattttgtggaatgagcg 19740437  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| || ||  | ||||| || | ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  19740438 gaatgatagagttttcagaaataaacaaagctctctatcgcatatgttagataaagtaaaatcatattccttgtggtggctgaaagctagtaatg 19740532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 5790356 - 5790580
Alignment:
Q  87 gttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatat 186  Q
    ||||||||||  |||| ||||||||| ||||||||||| | ||||||| | |||||||| || |||||| ||||||||   || |||||||||||||| |    
T  5790356 gttgaaggggctgaatctcaggttatctcagaccatttctcgcaatttatccattatgctggtggtttgcaatcgcggagatcattttttcaccttattt 5790455  T
Q  187 ggctcctt-gtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatctta 285  Q
    | |||||| |||||| |||| | | |||||||||||| |||| |||    ||||||| |||||| |||||||| ||| |||||||| |||| ||||| ||    
T  5790456 gactcctttgtgttttgattatttggaatgatcggaatgacatgtt----aggaacaaacaaagttctctaccacaactgttagatcaagttaaatccta 5790551  T
Q  286 ttccttgtggtggttgaaagctagtaatg 314  Q
    ||| |||||||||||||||||||||||||    
T  5790552 ttcgttgtggtggttgaaagctagtaatg 5790580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 46145617 - 46145323
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||||| ||| |||||| ||| |  |||| || |||||||||  ||||| |  | |||||||||||||  |||||||||  |||| | ||  ||||||    
T  46145617 aatcatctatttttgtcttgtccgtactttgatgtgttgtggccgatggtgcgagcttggcttggtgttgttggggtcgaaactcagttcataacagacc 46145518  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    |||||||||||||| || |||||||||| ||| ||| | | |||| ||| ||||| || || || |||||  | ||||||||||| |||| |||||| ||    
T  46145517 attttttgcaatttattaattatgcaggtggtatgagagcacggcgttcttttttccatctaatttggcttatgtgtgtttggatattgtggaatgagcg 46145418  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| || ||  | ||| | || | ||| |||||| |||||||  ||||||||||||||||||| | |||||| || ||| |||||| ||||||||    
T  46145417 gaatgatagagttttctgaaataaacacagctctttaccgcatttgttagataaagtaaaatcatgttccttatgatggatgaaagttagtaatg 46145323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 4548443 - 4548559
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| ||||||||  |||||||| | ||||||||||| ||||||||||| | |||   ||| ||||| |||||| |||||||| || | ||||||    
T  4548443 ttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatcattttgtgcaatttattgaatatgca 4548542  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  4548543 ggtggtttgaaatcgcg 4548559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 55726035 - 55726085
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  55726035 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 55726085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 8361016 - 8360900
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| | |||||| || | ||||||    
T  8361016 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgttcaatttattgaatatgca 8360917  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  8360916 ggtggtttgaaatcgcg 8360900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 5148359 - 5148309
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  5148359 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 5148309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 7403857 - 7403728
Alignment:
Q  19 tcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcaga 118  Q
    |||||||| ||||| |||||| |||  ||||| |||| || ||||||||||||||| ||||||| || || | ||||||||| | |||    | ||||||    
T  7403857 tcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtggtaggggtcgactctcaatcaacttcaga 7403758  T
Q  119 ccattttttgcaatttgttcattatgcagg 148  Q
     ||||||||||||||| || ||||||||||    
T  7403757 tcattttttgcaatttattaattatgcagg 7403728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 20002660 - 20002371
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| ||| | ||| ||||| ||||||||  ||||| || ||||||||| ||  |||||||| || | ||| | ||| ||||| |    
T  20002660 aatcatatgtttttgtcttgtccatttttcggtgcattgtggcctatggtgcgggcatggcttgatgccgaaggggtagattctcatgctatctcagatc 20002561  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    ||||| |||||||| || | |||| ||| || |||||||  || |  || || |||||  | || ||||| |  ||||||||| |||| | ||| || ||    
T  20002560 attttgtgcaatttattgaatatgtaggtggcttgaaattccgtcgatctttatttcatttgatttggcttcagtgtgtttgggttttattgaaggaacg 20002461  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    ||| |||||||| ||  |||||   ||||| ||| |||| | | |||||||||||||||||||  || ||||||||||||||||||||||    
T  20002460 gaatgacaggttatttcggaactgtcaaagttctataccactattgttagataaagtaaaatcacataccttgtggtggttgaaagctag 20002371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 314
Target Start/End: Original strand, 17402058 - 17402178
Alignment:
Q  194 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgt 293  Q
    ||||||||  |||||| |||||| ||||| || ||| | || || |||| | |||||||| |||| || |||||||||||||||||||| | ||| ||||    
T  17402058 tgtgtttgagttttgtggaatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagataaagtaaaatcatcttctttgt 17402157  T
Q  294 ggtggttgaaagctagtaatg 314  Q
    ||| ||| || ||||||||||    
T  17402158 ggtagttaaaggctagtaatg 17402178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 11587631 - 11587690
Alignment:
Q  255 taccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  11587631 taccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 11587690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 36223531 - 36223581
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||||||||||| ||||||||||| | | |||||||||||||||    
T  36223531 tgttagataaagtaaaatcatattccttgtgatagctgaaagctagtaatg 36223581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 54483601 - 54483651
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  || ||||||||||| |||||||||||||||    
T  54483601 tgttagataaagtaaaatcaaataccttgtggtggctgaaagctagtaatg 54483651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 12697511 - 12697466
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctag 309  Q
    |||||||||||||||||||  || ||||||||||||||||||||||    
T  12697511 tgttagataaagtaaaatcaaataccttgtggtggttgaaagctag 12697466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 12697729 - 12697613
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| || ||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| || || || ||| |||||||| || | ||||||    
T  12697729 ttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctccgatcactttgtgcaatttattgaatatgca 12697630  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  12697629 ggtggtttgaaatcgcg 12697613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 2822466 - 2822529
Alignment:
Q  251 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||| ||  ||||||||||||| |||||  ||||  ||||||||||||||||||||||||    
T  2822466 tctctaccacagttgttagataaagtgaaatcaaattctctgtggtggttgaaagctagtaatg 2822529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 8360798 - 8360750
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||  || |||| |||||||||||||| |||||    
T  8360798 tgttagataaagtaaaatcaaataccttatggtggttgaaagccagtaa 8360750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 14137364 - 14137328
Alignment:
Q  272 aaagtaaaatcttattccttgtggtggttgaaagcta 308  Q
    |||||||||| |||||| |||||||||||||||||||    
T  14137364 aaagtaaaatattattctttgtggtggttgaaagcta 14137328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 2491161 - 2490860
Alignment:
Q  14 ggacatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatt 113  Q
    |||| |||||||||| |||||||||| ||| |  |||||||||||||||||  |||||||  | |||||||||||||| |||||||||  |||| | ||     
T  2491161 ggacgtcaatcatctttttctgtcttgtccgtactttggtgcgttgtggccgatggtgtgagcttggcttggtgttgatggggtcgaaactcagttcata 2491062  T
Q  114 tcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcga 212  Q
     ||||||||| |||||| ||| || |||||||||| |||| || | | || |  || ||||| || || || ||||| || ||||||||||| |||| ||    
T  2491061 acagaccattgtttgcagtttattaattatgcaggtggttcgagagcacgacgatcttttttccatctaatttggctgctgtgtgtttggatattgtgga 2490962  T
Q  213 atgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||| ||||| || ||  | ||||| || |  || || ||| |||| ||  |||||||||||||||||||||||||| |||||||| |||||| ||||||    
T  2490961 atgagcggaatgatagcgttttcagtaataatcatagttctttaccacatttgttagataaagtaaaatcttattccctgtggtggctgaaagttagtaa 2490862  T
Q  313 tg 314  Q
    ||    
T  2490861 tg 2490860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 314
Target Start/End: Original strand, 4646342 - 4646550
Alignment:
Q  107 ggttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggatt 205  Q
    ||||||||| || || || ||||||||| || |||||| ||| ||| ||||||||||||  ||  ||||||| || ||||| ||| | ||||||||| |     
T  4646342 ggttatttcggatcacttcttgcaatttattaattatgtaggtggtctgaaatcgcggcgatccctttttcatctgatatgactcttgtgtgtttgggta 4646441  T
Q  206 ttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaag 305  Q
    |||| ||| || || ||  | ||||| || |||||   |||||||||| |||  ||  ||||||||||||||||||| ||||| ||||||||||||||||    
T  4646442 ttgtggaacgaacgaaataagaggttatttaggaatcaacaaagctctatactacatctgttagataaagtaaaatcatattctttgtggtggttgaaag 4646541  T
Q  306 ctagtaatg 314  Q
    |||||||||    
T  4646542 ctagtaatg 4646550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 314
Target Start/End: Complemental strand, 6478292 - 6478167
Alignment:
Q  194 tgtgtttggattttgtcgaatgatcggaacgacaggttgttcaggaacacacaaagctctctaccgcaa-----atgttagataaagtaaaatcttattc 288  Q
    |||||||||||||||| || ||| ||||| || ||  | ||||| || | ||||||||||||||||||      |||||||||||||||||||| |||||    
T  6478292 tgtgtttggattttgtggactgagcggaatgatagagttttcagaaatagacaaagctctctaccgcatcgcatatgttagataaagtaaaatcatattc 6478193  T
Q  289 cttgtggtggttgaaagctagtaatg 314  Q
    |||||||||| | ||||||| |||||    
T  6478192 cttgtggtggctaaaagctaataatg 6478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 28351424 - 28351376
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  28351424 tgttagataaagtaaaatcatattcattgtggtggttgaaagctagtaa 28351376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 37192369 - 37192419
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37192369 tgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 47623491 - 47623557
Alignment:
Q  248 agctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||| |||| ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  47623491 agctctttaccacaaatgttagacaaagtaaaatcatcttctttgtggtggttaaaagctagtaatg 47623557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 43388283 - 43388167
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | ||||||||||| ||||||||||| | |||   ||| ||| | || ||| |||||||| || | ||||||    
T  43388283 ttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcatatcactttgtgcaatttattgaatatgca 43388184  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  43388183 ggtggtttgaaatcgcg 43388167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 16918254 - 16918299
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  16918254 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 16918299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 23635163 - 23635212
Alignment:
Q  263 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||| |||||  |||||||||||||||| |||||    
T  23635163 atgttagataaagtaaaatcatattctctgtggtggttgaaagcgagtaa 23635212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 37297947 - 37297991
Alignment:
Q  270 ataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||  || |||||||||||||||||||||||||||    
T  37297947 ataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37297991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 23635008 - 23635063
Alignment:
Q  108 gttatttcagaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    ||||||||||| ||||| ||||||||| || ||||||||||  |||||||||||||    
T  23635008 gttatttcagatcatttcttgcaatttattaattatgcaggtagtttgaaatcgcg 23635063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 23713832 - 23713881
Alignment:
Q  263 atgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    |||||||||||||||||||| |||||  | |||||||||||||| |||||    
T  23713832 atgttagataaagtaaaatcatattctctatggtggttgaaagcgagtaa 23713881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 43388065 - 43388024
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaag 305  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43388065 tgttagataaagtaaaatcaaataccttgtggtggttgaaag 43388024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 16918007 - 16918147
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  16918007 aatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatgtcagatc 16918106  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcg 161  Q
    | ||| |||||||| || | |||||||| || |||| ||||    
T  16918107 actttgtgcaatttattgaatatgcaggtggcttgacatcg 16918147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 30713323 - 30713363
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  30713323 ttagataaagtaaaatattattcattatggtggttgaaagc 30713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 12257740 - 12257941
Alignment:
Q  116 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 214  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12257740 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12257839  T
Q  215 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 310  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12257840 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12257939  T
Q  311 aa 312  Q
    ||    
T  12257940 aa 12257941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 12265132 - 12265333
Alignment:
Q  116 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaat 214  Q
    ||||||||| ||||||||  || ||||| |||| ||||||| |||||  |  |||||||||||||||||||||||| | ||||||||| | |||| ||||    
T  12265132 agaccatttcttgcaattcattaattattcaggtggtttgagatcgcaacgctcgttttttcaccttatatggctcttatgtgtttgggtgttgtggaat 12265231  T
Q  215 gatcggaac----gacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagt 310  Q
    || |||||     || ||  | |||||||| | ||||||||| ||| |||| |||||||||||||||||||| |||| | ||||||||||||||||||||    
T  12265232 gagcggaattaatgatagagttttcaggaataaacaaagctcactatcgcatatgttagataaagtaaaatcatattacatgtggtggttgaaagctagt 12265331  T
Q  311 aa 312  Q
    ||    
T  12265332 aa 12265333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 2529584 - 2529534
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  2529584 tgttagataaagtaaaatctcataccttgtggtggttgaaagctagtaatg 2529534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 37434048 - 37433932
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| |||||||| |||||| || | |||||| |||| ||||||||||| | ||| | ||| ||||| |||||| |||||||| || | |||||     
T  37434048 ttttggtgcattgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctcatgctatctcagatcattttgtgcaatttattgaatatgcg 37433949  T
Q  147 ggcggtttgaaatcgcg 163  Q
    || ||||||||||||||    
T  37433948 ggtggtttgaaatcgcg 37433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 25090098 - 25090035
Alignment:
Q  251 tctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||| ||  |||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  25090098 tctctaccacagttgttagataaagtaaaatcaaattccttgtggtggctgaaagctagtaatg 25090035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 13199821 - 13199771
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||| || |||||||||||| ||||||||||||||    
T  13199821 tgttagataaagtaaaatctcataccttgtggtggtcgaaagctagtaatg 13199771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 2170282 - 2170143
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| |||   ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |    
T  2170282 aatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatc 2170183  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatc 160  Q
    ||||| |||||||| || | |||||||| || ||||||||    
T  2170182 attttgtgcaatttattgaatatgcaggtggcttgaaatc 2170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 34137401 - 34137455
Alignment:
Q  260 caaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  34137401 caaatgttagacaaagtaaaatcatcttcattgtggtggttaaaagctagtaatg 34137455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 2170035 - 2169990
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  2170035 tagataaagtaaaatcacataccttgtggtggttgaaagctagtaa 2169990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 20823991 - 20823946
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || |||||||||||||||||||||||||    
T  20823991 tagataaagtaaaatcaaataccttgtggtggttgaaagctagtaa 20823946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 34137187 - 34137300
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| ||||||||||||||| ||   ||||| || |||||||  || ||   ||||  |||||  |||||||||||||||||| |||||||||||    
T  34137187 ttttggtgccttgtggccattggtgagggagtggctaggggttgaagctgttgaccctcagcatattttggaccattttttgcaatttattcattatgca 34137286  T
Q  147 ggcggtttgaaatc 160  Q
    ||  ||||||||||    
T  34137287 ggttgtttgaaatc 34137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 136614 - 136574
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  136614 ttagataaagtaaagttttattccttgtggtggttgaaagc 136574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 17699398 - 17699286
Alignment:
Q  47 ttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagaccattttttgcaatttgttcattatgca 146  Q
    ||||||||| ||||| || |||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |||||| |||||||| || | ||||||    
T  17699398 ttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgca 17699299  T
Q  147 ggcggtttgaaat 159  Q
    || || |||||||    
T  17699298 ggtggcttgaaat 17699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 18309362 - 18309402
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  18309362 ttagataaagtaaagttttattccttgtggtggttgaaagc 18309402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 43270392 - 43270100
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| |||   ||||||||| |||||| |  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||||| |    
T  43270392 aatcatttgtttttgtcttgtccaatttttggtgcattgtggtctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatctcagatc 43270293  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggc-tccttgtgtttggattttgtcgaatgatcg 219  Q
    ||||| |||||||| || | |||||||| || |||||||| || | ||| || |||||  | || |||| ||  ||||||| | | || | |||||| ||    
T  43270292 attttgtgcaatttattgaatatgcaggtggcttgaaatctcgtcgttccttatttcatttaatttggcttcagtgtgtttcggtgttatggaatgaacg 43270193  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||| |||| ||| ||   ||||   ||||| ||| |||| | | || ||||||||||||||||  || |||||||||| ||||||||||||||    
T  43270192 gaatgacatgttatttcagaaccgtcaaagttctataccactattgctagataaagtaaaatcacataccttgtggtgtttgaaagctagtaa 43270100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 5181612 - 5181533
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcga 100  Q
    |||||| ||||| ||||||  ||  |||||||||| |||||||||||||||| | ||||||| ||||| | |||||||||    
T  5181612 aatcatatgtttttgtcttgcccaacttttggtgccttgtggccattggtgtaggcatggctcggtgtggtaggggtcga 5181533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 20824238 - 20824096
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| | ||| |||||| |||  |||||||||| ||||||||  ||||| || | ||||||||||| ||||||||||| | |||   ||| ||||| |    
T  20824238 aatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctcatactatctcagatc 20824139  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    | ||| ||| |||| || | |||||||| || |||||||||||    
T  20824138 actttgtgcgatttattgaatatgcaggtggcttgaaatcgcg 20824096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 37433830 - 37433788
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  37433830 tgttagataaagtaaaatcaaataccttgtggtggttgaaagc 37433788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 5181385 - 5181317
Alignment:
Q  246 aaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||| ||| |||| || |||||||||||||||||||| | ||  ||||||||||| |||| ||||||||    
T  5181385 aaagttctttaccacatatgttagataaagtaaaatcatcttatttgtggtggttaaaagttagtaatg 5181317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 17699180 - 17699140
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaa 304  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  17699180 tgttagataaagtaaaatcaaataccttgtggtggttgaaa 17699140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 25890758 - 25890718
Alignment:
Q  266 ttagataaagtaaaatcttattccttgtggtggttgaaagc 306  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  25890758 ttagataaagtaaagttttattctttgtggtggttgaaagc 25890718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 48394617 - 48394547
Alignment:
Q  249 gctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatgatgtc 319  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  48394617 gctctctaccgcatatgttagataaaataaaatcatattccttgtggtggttgaaagctagtaatgttgtc 48394547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 37254700 - 37254406
Alignment:
Q  21 aatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttcagacc 120  Q
    |||||| ||||| |||||| |||   ||| ||||| ||||||||  ||||| || ||||||||||||| ||||||||  | | ||| | ||| ||||| |    
T  37254700 aatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtaaattctcatgctatctcagatc 37254601  T
Q  121 attttttgcaatttgttcattatgcaggcggtttgaaatcgcggcattcgttttttcaccttatatggctcct-tgtgtttggattttgtcgaatgatcg 219  Q
    ||||| |||||||| || | |||||||| || ||| |||| || |  || || |||||  |||| ||||| |  ||||||||| |||| | ||||||  |    
T  37254600 attttgtgcaatttattgaatatgcaggtggcttggaatcccgtcgatctttatttcattttatttggcttcagtgtgtttgggttttatggaatgaatg 37254501  T
Q  220 gaacgacaggttgttcaggaacacacaaagctctctaccgcaaatgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    ||| | |||||| ||  |||||   ||||| ||| |||| ||| |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  37254500 gaatggcaggttatttcggaactgtcaaagttctataccacaattgttagataaagtaaaatcacataccttgtggtggttgaaagctagtaatg 37254406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 18530457 - 18530310
Alignment:
Q  16 acatcaatcatctgtttctgtcttatccttcttttggtgcgttgtggccattggtgtggtcatggcttggtgttgaaggggtcgaatatcaggttatttc 115  Q
    |||| |||||| ||||| |||||| |||   ||||||||| ||||||||  ||||| || | ||||||||||| |||||||| || | ||| | ||| ||    
T  18530457 acatgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatc 18530358  T
Q  116 agaccattttttgcaatttgttcattatgcaggcggtttgaaatcgcg 163  Q
    ||| |||||| |||||||| || | |||||||| || |||||||||||    
T  18530357 agatcattttgtgcaatttattgaatatgcaggtggcttgaaatcgcg 18530310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 25619157 - 25619107
Alignment:
Q  264 tgttagataaagtaaaatcttattccttgtggtggttgaaagctagtaatg 314  Q
    |||||||||||||||||||  || |||| ||||||||||||||||||||||    
T  25619157 tgttagataaagtaaaatcacataccttatggtggttgaaagctagtaatg 25619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 18530205 - 18530160
Alignment:
Q  267 tagataaagtaaaatcttattccttgtggtggttgaaagctagtaa 312  Q
    ||||||||||||||||  || ||||||||||||||||| |||||||    
T  18530205 tagataaagtaaaatcacataccttgtggtggttgaaaactagtaa 18530160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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