View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9286_low_24 (Length: 284)

Name: NF9286_low_24
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9286_low_24
NF9286_low_24
[»] chr4 (9 HSPs)
chr4 (1-233)||(14173978-14174208)
chr4 (1-233)||(14178732-14178962)
chr4 (1-233)||(28611662-28611892)
chr4 (1-231)||(28606902-28607130)
chr4 (1-233)||(44161627-44161855)
chr4 (2-233)||(11104511-11104738)
chr4 (22-232)||(48826793-48827000)
chr4 (127-228)||(48708155-48708256)
chr4 (53-212)||(24726288-24726442)
[»] chr8 (4 HSPs)
chr8 (1-233)||(12930717-12930947)
chr8 (1-233)||(12935463-12935693)
chr8 (111-231)||(26504945-26505063)
chr8 (121-233)||(15588948-15589060)
[»] chr1 (1 HSPs)
chr1 (1-233)||(34907180-34907410)
[»] chr7 (5 HSPs)
chr7 (1-233)||(37040520-37040750)
chr7 (2-233)||(15290273-15290499)
chr7 (21-226)||(12099060-12099263)
chr7 (1-176)||(12082055-12082227)
chr7 (87-167)||(2757370-2757448)
[»] chr5 (3 HSPs)
chr5 (1-233)||(29106969-29107199)
chr5 (4-233)||(42911084-42911310)
chr5 (142-232)||(38997230-38997320)
[»] chr2 (1 HSPs)
chr2 (1-233)||(8539224-8539456)
[»] chr3 (2 HSPs)
chr3 (5-105)||(51302206-51302306)
chr3 (197-233)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (142-233)||(2100291-2100379)
chr6 (99-149)||(2100723-2100771)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14173978 - 14174208
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14173978 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 14174077  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  14174078 atctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 14174175  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  14174176 tagagggttttccacgttaaatattggtgttca 14174208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14178732 - 14178962
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178732 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 14178831  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  14178832 atctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 14178929  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  14178930 tagagggttttccacgttaaatattggtgttca 14178962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 28611892 - 28611662
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611892 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 28611793  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  28611792 atctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 28611695  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    ||||||||||| |||||||||||||||||||||    
T  28611694 tagagggtttttcacgttaaatattggtgttca 28611662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28607130 - 28606902
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607130 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacgggaaacactatattgt 28607031  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  28607030 atctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 28606933  T
Q  201 tagagggttttccacgttaaatattggtgtt 231  Q
    ||||||||||| |||||||||||||||||||    
T  28606932 tagagggtttttcacgttaaatattggtgtt 28606902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44161627 - 44161855
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  44161627 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtcttacgggaaacactatattgt 44161726  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||   ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  44161727 atctcttgtgtgtgt--aagagagtggagaga--attgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 44161822  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  44161823 tagagggttttccacgttaaatattggtgttca 44161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 11104511 - 11104738
Alignment:
Q  2 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgta 101  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  11104511 ggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaataggagtgggtctcacgggaaacactatattgta 11104610  T
Q  102 tctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtatt 201  Q
    ||||||   ||||||  ||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||| || |||||  ||||    
T  11104611 tctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcggagtttgtcccgtggt-ttaccctcgatatt 11104706  T
Q  202 agagggttttccacgttaaatattggtgttca 233  Q
    ||||| ||||| | ||||||||||||||||||    
T  11104707 agaggattttctatgttaaatattggtgttca 11104738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 48827000 - 48826793
Alignment:
Q  22 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga 121  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   ||||||||||||||||||||||||||||||||||||||   |||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga 48826903  T
Q  122 gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa 221  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| ||||||||||||||    
T  48826902 gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa 48826804  T
Q  222 tattggtgttc 232  Q
    |||||||||||    
T  48826803 tattggtgttc 48826793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
Q  127 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg 226  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  227 gt 228  Q
    ||    
T  48708156 gt 48708155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 212
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
Q  53 ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat 152  Q
    |||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| |||  ||     ||||| ||||||||||||| | || |||||||||    
T  24726442 ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat 24726348  T
Q  153 atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc 212  Q
    ||| ||||||||||||| ||||||||| |||||  |||||||   ||||||| |||||||    
T  24726347 ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12930717 - 12930947
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12930717 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgt 12930816  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  12930817 atctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 12930914  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  12930915 tagagggttttccacgttaaatattggtgttca 12930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12935463 - 12935693
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||    
T  12935463 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaagtaggtctcacgggaaacactatattgt 12935562  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  12935563 atctcttgtgtgtgtgaga--gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 12935660  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  12935661 tagagggttttccacgttaaatattggtgttca 12935693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
Q  111 tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt 210  Q
    ||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| |||   ||||||| ||| |    
T  26505063 tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat 26504965  T
Q  211 tccacgttaaatattggtgtt 231  Q
    | |||||||||||||| ||||    
T  26504964 t-cacgttaaatattgatgtt 26504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  121 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa 220  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || | |||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  221 atattggtgttca 233  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34907180 - 34907410
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34907180 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaagtaggtctcacgggaaacactatattgt 34907279  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  34907280 atctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 34907377  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  34907378 tagagggttttccacgttaaatattggtgttca 34907410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37040750 - 37040520
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37040750 gggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaagtaggtctcacggaaaacactatattgt 37040651  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtat 200  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  37040650 atctcttgtgtgtgtgag--agagtggagaaaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggtat 37040553  T
Q  201 tagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||    
T  37040552 tagagggttttccacgttaaatattggtgttca 37040520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 15290273 - 15290499
Alignment:
Q  2 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||| |||||| ||| |||||||||| |||||||||||||||    
T  15290273 ggaaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaataggagtgggtctcacgg-aaacactatattgta 15290369  T
Q  102 tctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtatt 201  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||| | | |||| |||||    
T  15290370 tctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttggagtttgtcccgtggtttatacctcggtatt 15290467  T
Q  202 agagggttttccacgttaaatattggtgttca 233  Q
    ||||||||||||||||||||||||||||||||    
T  15290468 agagggttttccacgttaaatattggtgttca 15290499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 12099060 - 12099263
Alignment:
Q  21 gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagag 120  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| ||||||||| |||| ||||    
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag 12099159  T
Q  121 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa 220  Q
      ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| ||   ||||||||||||| ||||| ||    
T  12099160 --agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaa 12099257  T
Q  221 atattg 226  Q
    ||||||    
T  12099258 atattg 12099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 12082055 - 12082227
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgt 100  Q
    |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| ||   ||||||   |||||||||||||||    
T  12082055 gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaataggagcgagtctcattagaaacactatattgt 12082154  T
Q  101 atctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagttt 176  Q
    ||||||| |  ||||   |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  12082155 atctcttttccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttggagttt 12082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
Q  87 aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt 167  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||||| || |||||| || ||||||||||||||||||    
T  2757448 aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt 2757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29107199 - 29106969
Alignment:
Q  1 gggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattg 99  Q
    ||||||||||||  ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||    
T  29107199 gggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagtaggtctcacgggaaacactat-ttg 29107101  T
Q  100 tatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagta 199  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  29107100 tatctcttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtttttccctcggta 29107003  T
Q  200 ttagagggttttccacgttaaatattggtgttca 233  Q
    ||||||||||||||||||||||||||||||||||    
T  29107002 ttagagggttttccacgttaaatattggtgttca 29106969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 42911310 - 42911084
Alignment:
Q  4 aaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatc 103  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42911310 aaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaagtaggtctcaagggaaacactatattgtatc 42911211  T
Q  104 tcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattag 203  Q
    | |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  42911210 ttttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcggagtttgtcccgtggtttttccctcggtattag 42911114  T
Q  204 agggttttccacgttaaatattggtgttca 233  Q
    ||||||||||| ||||||||||||||||||    
T  42911113 agggttttccatgttaaatattggtgttca 42911084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  142 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc 232  Q
    |||||||||||||| |||| ||||||| |||||||||||||| || ||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8539224 - 8539456
Alignment:
Q  1 gggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactata---t 97  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| ||| |||||||||| ||||||||||   |    
T  8539224 gggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtgggtctcacgg-aaacactataatat 8539322  T
Q  98 tgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcag 197  Q
    |||||||||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||||| |    
T  8539323 tgtatctcttgtgtgtgtaagag--agtggagataatattgtaatattcttaaatatagtggaatatctttcggagtttgtcccgtgatttttccctcgg 8539420  T
Q  198 tattagagggttttccacgttaaatattggtgttca 233  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8539421 tattagagggttttccacgttaaatattgatgttca 8539456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 51302206 - 51302306
Alignment:
Q  5 aaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatct 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| ||| |||||||||||||||||||||||||||||    
T  51302206 aaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaataggagtgggtctcacgggaaacactatattgtatct 51302305  T
Q  105 c 105  Q
    |    
T  51302306 c 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  197 gtattagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 2100379 - 2100291
Alignment:
Q  142 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 233  Q
    |||||||||||||||||||||||||||||||||||| |||   || |||| |||| ||||| |||||||||||| |||||||||| ||||||    
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca 2100291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
Q  99 gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt 149  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  2100771 gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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