View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_25 (Length: 279)
Name: NF9286_low_25
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 7840294 - 7840079
Alignment:
| Q |
12 |
cagagagtatagcgtgatgtcccaagttttagcgaaggatattaccgatggataaatacaagattctgatttctgacagcaaatgtatcacgaggcatat |
111 |
Q |
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| T |
7840294 |
cagagagtatagcgtgatgtctcaagttttagcaaaggatattaccgatggataaatacaagattctgatttctgacagcaaatgtatcacgaggcatat |
7840195 |
T |
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| Q |
112 |
cagttagattattgacaacgtgttaaacatattacggtgatgcattttgcagaaattttcaaactccattccaaagtcaagattgtactgataggtgcgc |
211 |
Q |
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| T |
7840194 |
cagttagattattgacaacgtgttaaacatattacggtgatgcattttgcagaaattttcaaactccactccaaagtcaagattgtactgataggtgcgc |
7840095 |
T |
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| Q |
212 |
aagtgcacggaaatat |
227 |
Q |
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| T |
7840094 |
aagtgcacggaaatat |
7840079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 7846279 - 7846058
Alignment:
| Q |
13 |
agagagtatagcgtgatgtccc--aagttttagcgaaggatattaccgatggataaatacaagattctgatttctgacagcaaatgtatcacgaggcata |
110 |
Q |
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| T |
7846279 |
agagagtatagcgtgaagtctctcaggttttagcaaaggatatcaccaatggataaatacaagattctgatttctgacagcaaatgtatcacgaggcata |
7846180 |
T |
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| Q |
111 |
tcagttagattattgacaacgtgttaaacatattacggtgatgcattttgcagaaattttcaaactccattccaaagtcaagattgtactgataggtgcg |
210 |
Q |
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| T |
7846179 |
tcagttagattattgacaacgtgttaaacatattacagtgatgcaatttgcagaaattttcaaactccattccaaagtcaagattgtactgataggtccg |
7846080 |
T |
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| Q |
211 |
caagtgcacggaaatattggtt |
232 |
Q |
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| T |
7846079 |
caagtgcatggaaatatcggtt |
7846058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Complemental strand, 7160092 - 7160057
Alignment:
| Q |
227 |
ttggttgcaaaattggaaaaataacttggttttaat |
262 |
Q |
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| T |
7160092 |
ttggttgcaaaattggaaaaataacttgtttttaat |
7160057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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