View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9286_low_27 (Length: 275)

Name: NF9286_low_27
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9286_low_27
NF9286_low_27
[»] chr6 (16 HSPs)
chr6 (27-261)||(2935112-2935349)
chr6 (25-262)||(2996703-2996940)
chr6 (27-262)||(2929822-2930059)
chr6 (27-247)||(2974520-2974740)
chr6 (25-248)||(2937971-2938194)
chr6 (25-223)||(2927671-2927869)
chr6 (52-253)||(2983404-2983605)
chr6 (25-206)||(3003174-3003351)
chr6 (80-262)||(2965093-2965280)
chr6 (25-206)||(2952447-2952624)
chr6 (158-262)||(2954726-2954829)
chr6 (90-248)||(2658311-2658475)
chr6 (39-98)||(2954666-2954725)
chr6 (203-254)||(2986421-2986472)
chr6 (25-75)||(2965020-2965070)
chr6 (215-247)||(2952657-2952689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (27-261)||(34573-34807)
[»] chr7 (1 HSPs)
chr7 (40-261)||(3339551-3339775)
[»] chr3 (3 HSPs)
chr3 (29-206)||(49613951-49614128)
chr3 (56-205)||(49618953-49619102)
chr3 (81-195)||(49617650-49617758)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 27 - 261
Target Start/End: Original strand, 2935112 - 2935349
Alignment:
Q  27 ttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcaca 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |    
T  2935112 ttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaa 2935211  T
Q  127 ctgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagt---acaagcctccaagtgatttct 223  Q
    ||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||   |||||||||| ||||||||||    
T  2935212 ctgctgcttccattgctggaatcttactactttttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttct 2935311  T
Q  224 ttcattgtttagttcataattattgctattagtattat 261  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2935312 ttcattgttgagttcataattatttctattagtattat 2935349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 2996940 - 2996703
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggca 124  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  2996940 aattctctattctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcaggcgtgattatggcaagactccttggca 2996841  T
Q  125 cactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctt 224  Q
      ||||||||||| |||| |||||| |||||||||||||||||||  |||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  2996840 agctgctgcttcctttgctggaattgtactacttgttctcacttttattcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctt 2996741  T
Q  225 tcattgtttagttcataattattgctattagtattatc 262  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2996740 tcattgttgagttcataattattgctattagtattatc 2996703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 2929822 - 2930059
Alignment:
Q  27 ttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcaca 126  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  2929822 ttctctattctatgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcaggcgtgattattgaagtactccttggcaaa 2929921  T
Q  127 ctgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaag--tgatttctt 224  Q
    ||||||||||| |||| ||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||  |||||||||    
T  2929922 ctgctgcttccattgctggattcttactactttttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttctt 2930021  T
Q  225 tcattgtttagttcataattattgctattagtattatc 262  Q
    | |||||| ||||||||||||||| ||||  |||||||    
T  2930022 ttattgttgagttcataattattgttattcttattatc 2930059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 2974520 - 2974740
Alignment:
Q  27 ttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcaca 126  Q
    ||||||||||| |||||||| || ||||||| ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2974520 ttctctattctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctctaaggcgtgattattgcaatactccttggcaca 2974619  T
Q  127 ctgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctttc 226  Q
    ||||||||||| |||| |||||||| ||||||||||||||| || |||||  ||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  2974620 ctgctgcttccattgctggaatttttctacttgttctcactataattcaaagagtttgttctgtcttgcaagtagtacaagcatcctagtgatttctttc 2974719  T
Q  227 attgtttagttcataattatt 247  Q
    |||||| ||||||||||||||    
T  2974720 attgttgagttcataattatt 2974740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 2937971 - 2938194
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggca 124  Q
    ||||||||||||| |||||||| ||||||||||| || |  ||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||    
T  2937971 aattctctattctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactctgaggcgtgattatggcaaaactccttggca 2938070  T
Q  125 cactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctt 224  Q
     |||||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  2938071 aactgctgcttccattgctggaatcttactacttattctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctt 2938170  T
Q  225 tcattgtttagttcataattattg 248  Q
    |||||||| |||||||||||||||    
T  2938171 tcattgttgagttcataattattg 2938194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 2927671 - 2927869
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggca 124  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  | |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  2927671 aattctctattctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcaggcgtgattattgcaaaactccttggca 2927770  T
Q  125 cactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttct 223  Q
     |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  2927771 aactgctgcttccattgcgggaatcttactacttgttctcactttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 52 - 253
Target Start/End: Original strand, 2983404 - 2983605
Alignment:
Q  52 atgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcacactgctgcttccgttgcgggaatttt 151  Q
    ||||||||||||| |||||| || ||| ||||||||| |||||||||||||||||| |||||||||||||| | | ||||||||||||||| ||| | ||    
T  2983404 atgctttttgtaataatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtctt 2983503  T
Q  152 actacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctttcattgtttagttcataattattgcta 251  Q
    |||||||||||||||| || ||||| |||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||||||||||| ||    
T  2983504 actacttgttctcactataattcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcataattattgtta 2983603  T
Q  252 tt 253  Q
    ||    
T  2983604 tt 2983605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 3003351 - 3003174
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggca 124  Q
    |||||||||||||  |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  3003351 aattctctattcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaactccctggca 3003252  T
Q  125 cactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaa 206  Q
     |||||||||||| |||| ||||| ||||| |||| |||||||||||||||| ||||||||    |||||||||||||||||    
T  3003251 aactgctgcttccattgctggaatcttactccttgctctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 3003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 262
Target Start/End: Original strand, 2965093 - 2965280
Alignment:
Q  80 gttgaaggctactctcaggcgtgattattgcaatactccttggcacactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatca 179  Q
    ||||||| | ||||| | ||||||||| |||| ||||||||||||  ||||||||||| |||| ||||| ||||||||||||||||||||| ||||| ||    
T  2965093 gttgaagtccactctgatgcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaaca 2965192  T
Q  180 gtttgttcagtcttgcaagtagtacaa---------gcctccaagtgatttctttcattgtttagttcataattattgctattagtattatc 262  Q
    ||||||    |||||||||||||||||         || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2965193 gtttgt----tcttgcaagtagtacaacaacctaatgcttcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 2952447 - 2952624
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggca 124  Q
    ||||||||||| |  |||||||  ||||||| |||||||  ||||||||| ||| |||||| || ||||| |||||||||||| |||| |||||||||||    
T  2952447 aattctctattattggcaaagaaataaatgcattttgtagtaatccttggaataagttgaaagccactctgaggcgtgattatggcaaaactccttggca 2952546  T
Q  125 cactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaa 206  Q
     |||||||||||| |||| |||||  |||| |||| |||||||||||||||| ||||||||    |||||||||||||||||    
T  2952547 aactgctgcttccattgctggaatcgtactccttgctctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 2952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 2954726 - 2954829
Alignment:
Q  158 tgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctttcattgtttagttcataattattgctattagta 257  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||    
T  2954726 tgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcat-attattgctattagta 2954824  T
Q  258 ttatc 262  Q
    |||||    
T  2954825 ttatc 2954829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 248
Target Start/End: Complemental strand, 2658475 - 2658311
Alignment:
Q  90 actctcaggcgtgattattgcaatactccttggcacactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcag 189  Q
    ||||| |||||||||||||||| |||||||||| |  ||| ||||||| |||| ||||| ||||||||| |||||||| || ||||| |||||||||| |    
T  2658475 actctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagtttgttctg 2658376  T
Q  190 tcttgcaagtagtacaa------gcctccaagtgatttctttcattgtttagttcataattattg 248  Q
    |||| ||||||||||||      | |||| |||||||||||||||||||  ||||||||||||||    
T  2658375 tctttcaagtagtacaacctaatggctcctagtgatttctttcattgttcggttcataattattg 2658311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 2954666 - 2954725
Alignment:
Q  39 tgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcagg 98  Q
    |||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  2954666 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 2954725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  203 acaagcctccaagtgatttctttcattgtttagttcataattattgctatta 254  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 2965020 - 2965070
Alignment:
Q  25 aattctctattctatgcaaagacttaaatgctttttgtaagaatccttggc 75  Q
    ||||||||||||| |||||||| || ||||||||||||  |||||||||||    
T  2965020 aattctctattctttgcaaagatttgaatgctttttgtgggaatccttggc 2965070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 2952657 - 2952689
Alignment:
Q  215 gtgatttctttcattgtttagttcataattatt 247  Q
    |||||||||||||||||| ||||||||||||||    
T  2952657 gtgatttctttcattgttgagttcataattatt 2952689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 261
Target Start/End: Complemental strand, 34807 - 34573
Alignment:
Q  27 ttctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcaca 126  Q
    ||||||||||| |||||| |||||||||| |||||||  ||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| |    
T  34807 ttctctattctttgcaaaaacttaaatgcattttgtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaa 34708  T
Q  127 ctgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctttc 226  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  34707 ctgctgcttccgttgctggaattttactacttgttctcactttgcttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttc 34608  T
Q  227 attgtttagttcataattattgctattagtattat 261  Q
    |||||| ||||||||||||||||||||||||||||    
T  34607 attgttgagttcataattattgctattagtattat 34573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 3339551 - 3339775
Alignment:
Q  40 gcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcacactgctgcttccgt 139  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  3339551 gcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccat 3339650  T
Q  140 tgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaagcctccaagtgatttctttcattgtttagt--- 236  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||| |||       
T  3339651 tgctggaattgtactacttgttctcactttacttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttca 3339750  T
Q  237 tcataattattgctattagtattat 261  Q
    |||||||||||||| ||||||||||    
T  3339751 tcataattattgctcttagtattat 3339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 49613951 - 49614128
Alignment:
Q  29 ctctattctatgcaaagacttaaatgctttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcacact 128  Q
    ||||||||||||  ||||||| |||| ||||||| |  ||||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||| |||    
T  49613951 ctctattctatgtgaagacttgaatggtttttgtcatgatccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaact 49614050  T
Q  129 gctgcttccgttgcgggaattttactacttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtacaa 206  Q
    ||||||||| |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||| ||||||    
T  49614051 gctgcttccattgctggaattttactacttattctctctttacttcaatcagtttgtgcagtgttgcaagttgtacaa 49614128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 205
Target Start/End: Original strand, 49618953 - 49619102
Alignment:
Q  56 tttttgtaagaatccttggcataggttgaaggctactctcaggcgtgattattgcaatactccttggcacactgctgcttccgttgcgggaattttacta 155  Q
    ||||||||| |||||||||||||   |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||| ||||||||||||    
T  49618953 tttttgtaataatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttacta 49619052  T
Q  156 cttgttctcactttacttcaatcagtttgttcagtcttgcaagtagtaca 205  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| |||||    
T  49619053 cttgttctctctttacttcaatcagtttgttctatcttgcaagttgtaca 49619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 49617650 - 49617758
Alignment:
Q  81 ttgaaggctactctcaggcgtgattattgcaatactccttggcacactgctgcttccgttgcgggaattttactacttgttctcactttacttcaatcag 180  Q
    ||||||||||||||||||| ||||| ||||| || |   ||||| || |||||||| ||||| ||||||||||||||| ||||  |||||||||||||||    
T  49617650 ttgaaggctactctcaggcatgatttttgcactagt---tggca-acagctgcttctgttgctggaattttactacttattct--ctttacttcaatcag 49617743  T
Q  181 tttgttcagtcttgc 195  Q
    ||| ||| |||||||    
T  49617744 tttattctgtcttgc 49617758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University