View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_31 (Length: 268)
Name: NF9286_low_31
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_31 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 5666234 - 5666459
Alignment:
| Q |
26 |
gtcatatcattttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5666234 |
gtcatatcattttaaaaatataccatgcaattaatttagttcattattagtaaataataataattaattatttaactacaaaccttttttgagcttgaaa |
5666333 |
T |
|
| Q |
126 |
gatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
5666334 |
gatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggc |
5666433 |
T |
|
| Q |
226 |
tgttagaccgccaagagcaaaccaag |
251 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
5666434 |
tgttagaccgccaagagcaaaccaag |
5666459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 5687315 - 5687529
Alignment:
| Q |
34 |
attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc |
133 |
Q |
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||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
5687315 |
atttttaatatataccatgcaattaatttagttcattattagtaaata---ataattaattatttaaagacaaaccttttttgagcatgaaagatggctc |
5687411 |
T |
|
| Q |
134 |
tctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggctgttagac |
233 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5687412 |
tctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttgccggcggctgttagac |
5687511 |
T |
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| Q |
234 |
cgccaagagcaaaccaag |
251 |
Q |
| |
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|||||||||||||||||| |
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| T |
5687512 |
cgccaagagcaaaccaag |
5687529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 5719431 - 5719645
Alignment:
| Q |
34 |
attttaaaaatataccatgcaattaatttagttcattattagcaaataataataattaattatttaacgacaaaccttttttgagcttgaaagatggctc |
133 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
5719431 |
attttaaaaatataccatgcaattgatttagttcattattagtaaata---ataattaaatatttaacgacaaaccttttttgagcatgaaagatggctc |
5719527 |
T |
|
| Q |
134 |
tctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattctcataagtcttgccggcggctgttagac |
233 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
5719528 |
tctccccacccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattctcataagtcttgcccgcgactgctagac |
5719627 |
T |
|
| Q |
234 |
cgccaagagcaaaccaag |
251 |
Q |
| |
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| |||||||||||||||| |
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| T |
5719628 |
caccaagagcaaaccaag |
5719645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 106054 - 105909
Alignment:
| Q |
106 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc |
205 |
Q |
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||||||||||| ||||||||||| |||||| ||||| |||||||||||||| ||| |||| || ||||||||||||||||||||||| ||| ||||| |
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| T |
106054 |
aaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtgttgtgagaagaaatttaacagctttgcgaatagcagcgcaattg |
105955 |
T |
|
| Q |
206 |
tcataagtcttgccggcggctgttagaccgccaagagcaaaccaag |
251 |
Q |
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|||||||||||| || |||| || ||| |||||||||||||||| |
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| T |
105954 |
gtataagtcttgccagcagctgctaaaccaccaagagcaaaccaag |
105909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 250
Target Start/End: Complemental strand, 166591 - 166447
Alignment:
| Q |
106 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc |
205 |
Q |
| |
|
||||||||||| || |||||||| |||||| ||||| |||||||| | || |||||| | || |||||||||||||| |||||||| | | |||||| |
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| T |
166591 |
aaccttttttgggcatgaaagatagctctccccccacccaccatcttttccctgtattctcagaagaaatttaacagccttgcgaatcgtagcacaattg |
166492 |
T |
|
| Q |
206 |
tcataagtcttgccggcggctgttagaccgccaagagcaaaccaa |
250 |
Q |
| |
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||||||||| || || |||| || ||| ||||||||||||||| |
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| T |
166491 |
gtataagtctttccagcagctgctaaaccaccaagagcaaaccaa |
166447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 90717 - 90862
Alignment:
| Q |
106 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc |
205 |
Q |
| |
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||||||||| | || |||||||| |||||||||||| ||||| || | |||||||||||| || ||||||||||||||||| ||||| ||| |||||| |
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| T |
90717 |
aacctttttagggcatgaaagatagctctctccccaaccaccgtcgtttctttgtattgtgagaagaaatttaacagctttacgaatagcatcacaatta |
90816 |
T |
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| Q |
206 |
tcataagtcttgccggcggctgttagaccgccaagagcaaaccaag |
251 |
Q |
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|||| ||||||| || |||| || ||| |||||||| ||||||| |
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| T |
90817 |
gtataattcttgccagcagctgctaaaccaccaagagcgaaccaag |
90862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 13054531 - 13054391
Alignment:
| Q |
106 |
aaccttttttgagcttgaaagatggctctctccccatccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaagacaattc |
205 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||| |||||||||||||||||| ||| || ||||||| ||||||||| ||||| ||| | |||| |
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| T |
13054531 |
aaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaatcacaacagaattg |
13054432 |
T |
|
| Q |
206 |
tcataagtcttgccggcggctgttagaccgccaagagcaaa |
246 |
Q |
| |
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||||||||| || || |||| || ||| ||||||||||| |
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|
| T |
13054431 |
ctataagtctttccagcagctgctaaacctccaagagcaaa |
13054391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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