View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_35 (Length: 239)
Name: NF9286_low_35
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32652998 - 32652776
Alignment:
| Q |
1 |
gtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttattccacaaataagccaatatatctaaaaacaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32652998 |
gtcggaattcagcagcagttttctccagcccaataagatctgttgtaattcaaaagcaagtatgttattccacaaataagccaatatatctaaaaacaat |
32652899 |
T |
|
| Q |
101 |
tttaatgaaaatacaaacacctgttgattcatcaagttggtacggcataatttcaaaatattgcgaggcgaaattatgagataaatgtcccttgtgagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32652898 |
tttaatgaaaatacaaacacctgttgattcatcaagtcggtacggcataatttcaaaatattgcgaggcgaaattatgagataaatgtcccttgtgagtc |
32652799 |
T |
|
| Q |
201 |
aaattcaaatactggtaacatat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
32652798 |
aaattcaaatactggtaacatat |
32652776 |
T |
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