View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9286_low_39 (Length: 222)
Name: NF9286_low_39
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 33634300 - 33634110
Alignment:
| Q |
14 |
cagagataatttcggccataaattacaaagcgtggtttcactttattt-gcgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttg |
112 |
Q |
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| T |
33634300 |
cagagataatttcggccataaattacaaagcgtggtttcacttttttttgcgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttg |
33634201 |
T |
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| Q |
113 |
cagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacgattcattccttttcctcattcttcaatcacttcttcttcttc |
203 |
Q |
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| T |
33634200 |
cagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacgattcattccttttcctcattcttcaatcacttcttcttcttc |
33634110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 29191578 - 29191729
Alignment:
| Q |
63 |
cgagagaaaagaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcg |
153 |
Q |
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|||||| ||| | |||| |||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
29191578 |
cgagagtaaaaaggaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttcc |
29191677 |
T |
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| Q |
154 |
ttcgcacgattcattccttttcctcattcttcaatcacttcttcttcttcct |
205 |
Q |
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| T |
29191678 |
ttcgcaagattcattccttttccacattcttccatcacttcttcttcatcct |
29191729 |
T |
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