View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9286_low_4 (Length: 648)

Name: NF9286_low_4
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9286_low_4
NF9286_low_4
[»] chr6 (18 HSPs)
chr6 (66-636)||(32449954-32450512)
chr6 (65-435)||(23260483-23260829)
chr6 (67-245)||(34636188-34636366)
chr6 (66-245)||(25005144-25005323)
chr6 (482-648)||(10751285-10751450)
chr6 (498-648)||(23260339-23260489)
chr6 (265-449)||(10751459-10751634)
chr6 (265-377)||(25005320-25005432)
chr6 (482-648)||(34636516-34636668)
chr6 (446-602)||(26182412-26182565)
chr6 (67-166)||(26182602-26182700)
chr6 (296-374)||(34636386-34636457)
chr6 (390-449)||(34636448-34636507)
chr6 (66-141)||(11166587-11166662)
chr6 (94-231)||(24992444-24992578)
chr6 (355-393)||(26182570-26182608)
chr6 (484-533)||(13773185-13773234)
chr6 (520-601)||(20555629-20555709)
[»] chr1 (21 HSPs)
chr1 (65-636)||(35761741-35762303)
chr1 (482-648)||(37666903-37667068)
chr1 (265-449)||(37667077-37667252)
chr1 (64-201)||(37667265-37667401)
chr1 (422-636)||(19198451-19198668)
chr1 (68-245)||(9537427-9537602)
chr1 (66-233)||(16074710-16074879)
chr1 (332-537)||(16074945-16075150)
chr1 (557-644)||(9537120-9537206)
chr1 (557-648)||(43407092-43407182)
chr1 (571-648)||(8421966-8422043)
chr1 (557-648)||(338499-338589)
chr1 (521-636)||(16075097-16075211)
chr1 (574-648)||(33007376-33007450)
chr1 (65-188)||(21264718-21264841)
chr1 (510-572)||(6836246-6836308)
chr1 (557-637)||(25921879-25921958)
chr1 (585-636)||(6836394-6836445)
chr1 (584-623)||(18472638-18472677)
chr1 (446-537)||(28561736-28561825)
chr1 (584-633)||(28561834-28561885)
[»] chr3 (21 HSPs)
chr3 (312-648)||(16975453-16975801)
chr3 (66-449)||(5004619-5004970)
chr3 (18-245)||(46404633-46404861)
chr3 (65-245)||(16975252-16975433)
chr3 (482-648)||(5004445-5004610)
chr3 (376-636)||(11937566-11937839)
chr3 (66-169)||(16475278-16475381)
chr3 (482-648)||(46404326-46404478)
chr3 (153-241)||(11967965-11968053)
chr3 (557-648)||(7336419-7336509)
chr3 (295-374)||(46404537-46404615)
chr3 (390-449)||(46404487-46404546)
chr3 (508-623)||(9104522-9104637)
chr3 (585-648)||(43277771-43277834)
chr3 (66-153)||(9104174-9104261)
chr3 (490-553)||(17542446-17542508)
chr3 (77-170)||(17542813-17542904)
chr3 (510-572)||(17542500-17542562)
chr3 (181-233)||(8730913-8730966)
chr3 (181-233)||(9082800-9082853)
chr3 (279-368)||(11967862-11967951)
[»] scaffold0413 (3 HSPs)
scaffold0413 (65-374)||(8839-9125)
scaffold0413 (482-572)||(9184-9274)
scaffold0413 (390-449)||(9116-9175)
[»] chr4 (15 HSPs)
chr4 (269-636)||(49499191-49499572)
chr4 (66-245)||(28969254-28969431)
chr4 (99-241)||(49499045-49499187)
chr4 (574-648)||(55162561-55162635)
chr4 (560-648)||(13652928-13653016)
chr4 (560-648)||(13661053-13661141)
chr4 (507-648)||(40459293-40459432)
chr4 (572-648)||(28968964-28969045)
chr4 (584-632)||(2761801-2761849)
chr4 (510-572)||(69628-69690)
chr4 (66-152)||(41868570-41868655)
chr4 (484-553)||(69712-69780)
chr4 (585-636)||(69782-69833)
chr4 (265-318)||(28969204-28969257)
chr4 (615-648)||(55162640-55162673)
[»] chr7 (25 HSPs)
chr7 (268-623)||(21491197-21491568)
chr7 (67-245)||(15874008-15874186)
chr7 (268-623)||(18367031-18367401)
chr7 (468-623)||(22077977-22078132)
chr7 (75-235)||(21491577-21491739)
chr7 (64-245)||(22077631-22077810)
chr7 (65-227)||(18367412-18367577)
chr7 (482-648)||(15873700-15873852)
chr7 (66-245)||(48576332-48576509)
chr7 (508-648)||(11036071-11036210)
chr7 (557-648)||(10288516-10288606)
chr7 (296-374)||(15873911-15873988)
chr7 (557-648)||(40106201-40106291)
chr7 (483-648)||(12911418-12911581)
chr7 (575-648)||(12196421-12196494)
chr7 (574-648)||(49170026-49170102)
chr7 (390-449)||(15873861-15873920)
chr7 (66-202)||(9993291-9993427)
chr7 (65-207)||(48654339-48654479)
chr7 (508-572)||(9993633-9993697)
chr7 (483-534)||(12196497-12196548)
chr7 (484-537)||(48653595-48653648)
chr7 (584-636)||(48653534-48653586)
chr7 (66-153)||(12196729-12196816)
chr7 (265-318)||(22077807-22077860)
[»] chr5 (19 HSPs)
chr5 (47-450)||(4557859-4558241)
chr5 (67-227)||(536731-536891)
chr5 (147-245)||(536895-536993)
chr5 (482-648)||(537149-537301)
chr5 (483-636)||(4557694-4557850)
chr5 (296-374)||(537013-537090)
chr5 (483-648)||(30910117-30910279)
chr5 (571-648)||(40691279-40691356)
chr5 (483-648)||(38001301-38001461)
chr5 (390-449)||(537081-537140)
chr5 (484-553)||(6309116-6309184)
chr5 (585-636)||(6309186-6309237)
chr5 (66-153)||(27026621-27026708)
chr5 (68-153)||(6308625-6308710)
chr5 (584-636)||(25101617-25101669)
chr5 (584-636)||(25160710-25160762)
chr5 (484-537)||(42861770-42861823)
chr5 (584-621)||(42861832-42861869)
chr5 (487-535)||(6309083-6309130)
[»] chr2 (19 HSPs)
chr2 (65-217)||(32735391-32735543)
chr2 (483-648)||(18292419-18292582)
chr2 (557-648)||(40729152-40729242)
chr2 (520-637)||(28266847-28266964)
chr2 (557-648)||(40447872-40447962)
chr2 (557-648)||(41339978-41340068)
chr2 (557-648)||(34397544-34397632)
chr2 (520-628)||(12774137-12774244)
chr2 (66-170)||(12774954-12775056)
chr2 (133-225)||(29270702-29270792)
chr2 (65-233)||(1193598-1193765)
chr2 (584-626)||(35670499-35670541)
chr2 (484-537)||(12774190-12774243)
chr2 (484-553)||(44788932-44789000)
chr2 (585-636)||(44789002-44789053)
chr2 (516-602)||(29270993-29271078)
chr2 (483-537)||(36731989-36732043)
chr2 (484-537)||(35670550-35670603)
chr2 (528-572)||(44788866-44788910)
[»] scaffold1838 (3 HSPs)
scaffold1838 (111-245)||(221-353)
scaffold1838 (573-648)||(592-667)
scaffold1838 (420-463)||(514-557)
[»] chr8 (11 HSPs)
chr8 (571-648)||(41958147-41958224)
chr8 (528-623)||(40841227-40841322)
chr8 (65-170)||(22816487-22816590)
chr8 (571-637)||(44436526-44436592)
chr8 (133-233)||(35839168-35839268)
chr8 (584-623)||(3189140-3189179)
chr8 (584-623)||(22635733-22635772)
chr8 (508-569)||(35840649-35840710)
chr8 (585-623)||(22816026-22816064)
chr8 (64-141)||(20264999-20265076)
chr8 (64-141)||(21051628-21051705)
[»] scaffold0120 (1 HSPs)
scaffold0120 (66-141)||(2645-2720)
[»] scaffold0013 (1 HSPs)
scaffold0013 (65-170)||(243170-243275)


Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 66 - 636
Target Start/End: Complemental strand, 32450512 - 32449954
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||| |||| |||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32450414  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgatagataatgttatgtatgatag 265  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||              
T  32450413 aatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtat----gataatgtta---------- 32450328  T
Q  266 ataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaa 365  Q
             |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  32450327 ---------tgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaa 32450237  T
Q  366 tgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttgc------------ctt 453  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||            |||    
T  32450236 tgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttgcctatgagtttgtctt 32450137  T
Q  454 agtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450136 agtcgtgggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 32450037  T
Q  554 attgtgcctaagtggcggggttttagtctgcattttcatgatcatgca-tggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
     ||||||||||||||| ||| |||| ||| |||||||||||||||||| | |||||||||| ||||||||| ||  ||||||||    
T  32450036 gttgtgcctaagtggc-gggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 32449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 65 - 435
Target Start/End: Complemental strand, 23260829 - 23260483
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgatagataatgttatgtatgata 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||             
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtat----gataatgtta--------- 23260643  T
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataa 364  Q
              |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  23260642 ----------tgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataa 23260554  T
Q  365 atgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaata 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23260553 atgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtggatgatgatgtgttaata 23260483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 34636188 - 34636366
Alignment:
Q  67 ggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 34636366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 25005144 - 25005323
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||| | |||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25005144 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 25005243  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25005244 aataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 25005323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 10751450 - 10751285
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  10751450 tttgccttagtggctggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggc-gggttttagtc 10751352  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  10751351 tgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattat 10751285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 498 - 648
Target Start/End: Complemental strand, 23260489 - 23260339
Alignment:
Q  498 gttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatca 597  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23260489 gttaataatatatttttttgtggtgccttagtggcaggataacatcatgttgcattattgtgcctaagtgacggggttttagtctgcattttcatgatca 23260390  T
Q  598 tgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23260389 tgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 23260339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 265 - 449
Target Start/End: Complemental strand, 10751634 - 10751459
Alignment:
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataa 364  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  10751634 gataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataa 10751536  T
Q  365 atgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||        ||||| |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10751535 atga--------aaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 10751459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 265 - 377
Target Start/End: Original strand, 25005320 - 25005432
Alignment:
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataa 364  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25005320 gataattttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataa 25005419  T
Q  365 atgaaaatataga 377  Q
    |||||||||||||    
T  25005420 atgaaaatataga 25005432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 482 - 648
Target Start/End: Original strand, 34636516 - 34636668
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||||| |||||||     
T  34636516 tttgccttagtggcgggttaataatatatttctttgtgg-------------ggataacatcatattgcattattgtgccttagtggcggg-ttttagtg 34636601  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||| || |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  34636602 tgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 34636668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 446 - 602
Target Start/End: Complemental strand, 26182565 - 26182412
Alignment:
Q  446 tttgccttagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcat 545  Q
    ||||||||||||| ||||||||||||||| ||| | |||||||  ||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  26182565 tttgccttagtggcgggtattttatttgactatacgtttgcct--gtggcgggttaataatatatttcttggtcgtgccttagtggcgggataatatcat 26182468  T
Q  546 attgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcat 602  Q
    |||||||| |||||||   |||||  || |||||||| |||||||||||||||||||    
T  26182467 attgcattgttgtgccactgtggc-aggatttagtcttcattttcatgatcatgcat 26182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  67 ggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||| |  | || ||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 34636386 - 34636457
Alignment:
Q  296 tttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatgaaaatat 374  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  34636386 tttttctattcatatatgtttttgtggtatt-------aagtgttagactttgctgataaactaaataaatgaaaatat 34636457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 34636448 - 34636507
Alignment:
Q  390 atgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  34636448 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 34636507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtc 141  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||  | ||||||| ||| |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 24992444 - 24992578
Alignment:
Q  94 tattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaac 193  Q
    ||||||||| ||||  |||||||||||||| | ||||| |||||||| | ||||||||||  |||||| ||||||||   || |  ||||||||||||      
T  24992444 tattaagtactagggatatgttatgaattataagtagaaattcttgttt-ttgaaaagaa--aaacaattaaaatatttctttacgtggtaaaatttatt 24992540  T
Q  194 cttttataaaagttattagtttaattatattttatatg 231  Q
    ||||||||||| | |||| ||||||||  |||||||||    
T  24992541 cttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 26182608 - 26182570
Alignment:
Q  355 aactaaataaatgaaaatatagaaatatgagttttatga 393  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  26182608 aactaaataaatgaaaatatagaaatatgagttctatga 26182570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 13773234 - 13773185
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcg 533  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||    
T  13773234 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcg 13773185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 20555629 - 20555709
Alignment:
Q  520 gtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgca 601  Q
    |||| ||||||||||||||| ||||||||||||| ||||| ||| ||||  ||| |||||| | |||| |||| ||||||||    
T  20555629 gtgctttagtggcgggataatatcatattgcattgttgtgtctatgtgg-tgggatttagttttcattatcattatcatgca 20555709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 65 - 636
Target Start/End: Complemental strand, 35762303 - 35761741
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    |||||||||||||||||||||||||  | || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgtatgatagataatgttatgtatga 262  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||    ||||||||||           
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtat----gataatgtta------- 35762115  T
Q  263 tagataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaat 362  Q
                |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||    
T  35762114 ------------tgtggaatgacatttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaat 35762027  T
Q  363 aaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgta------------tttgc 450  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||            |||||    
T  35762026 aaatgaaaatatagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttgcctatgagtttgc 35761927  T
Q  451 cttagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgc 550  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  35761926 cttagtggcaggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcaggataacatcatactgc 35761827  T
Q  551 attattgtgcctaagtggcggggttttagtctgcattttcatgatcatgca-tggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||| ||||||||||||||| ||  |||| ||| |||||||||||||||||| | |||||||||| ||||||||| ||  ||||||||    
T  35761826 attgttgtgcctaagtggc-ggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 35761741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 37667068 - 37666903
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||    
T  37667068 tttgccttagtgacgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggc-ggattttagtc 37666970  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||    
T  37666969 tgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 37666903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 265 - 449
Target Start/End: Complemental strand, 37667252 - 37667077
Alignment:
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataa 364  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  37667252 gataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataa 37667154  T
Q  365 atgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||        |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  37667153 atga--------aaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgtgttaaaatctgactgtatttg 37667077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  64 tgaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaagg-ctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttata 201  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 422 - 636
Target Start/End: Complemental strand, 19198668 - 19198451
Alignment:
Q  422 atgatgtgttaatatctgactgtatttgccttagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggt 521  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||    
T  19198668 atgatgtgttaatctctgactgtgtttgcctgagtggcgggtattttatttgactatgcatttgccttaatgacgggttaataatatatttctttgtggt 19198569  T
Q  522 gccttagtggcgggataaca---tcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgca-tggcatatgcatttgt 617  Q
    ||||||||||||||||||||   |||||||||||| |||| |||||||||| ||  |||| ||| |||||| ||||||||||| |  ||||||||| |||    
T  19198568 gccttagtggcgggataacatcatcatattgcattgttgtacctaagtggc-ggaatttaatcttcatttttatgatcatgcattaacatatgcatctgt 19198470  T
Q  618 gtggtgtcttagtggcggg 636  Q
    |||||| ||  ||||||||    
T  19198469 gtggtgcctgtgtggcggg 19198451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 9537602 - 9537427
Alignment:
Q  68 gtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaa 167  Q
    |||||||||||| || ||||||  | || | |||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||  |||||| |||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa--aaacaagtaaaa 9537505  T
Q  168 tatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9537504 tataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgata 9537427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 66 - 233
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatg---ttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaac 162  Q
    ||||||||||||||| |||||||| || || |||||| | |||| |||   ||||||||||||| |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  163 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 233  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 332 - 537
Target Start/End: Original strand, 16074945 - 16075150
Alignment:
Q  332 agaagtgttagactttgctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgt 430  Q
    |||||||||||| |||  | |||||||||| ||||||||| |||  |||| ||||||| |||||||||||    |||| |||| |||||| |||||||||    
T  16074945 agaagtgttagattttttttataaactaaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggataatgatgtgt 16075044  T
Q  431 taatatctgactgtatttgccttagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtg 530  Q
    |||| ||| ||||| |||| || ||||| |||||||||||||||||||||| |||||||| |||||||||||||  ||||| ||||||||||||| ||||    
T  16075045 taatctcttactgtgtttgtctaagtggcgggtattttatttgattatgca-ttgccttaatggcgggttaatatcatattactttgtggtgcctgagtg 16075143  T
Q  531 gcgggat 537  Q
    |||||||    
T  16075144 gcgggat 16075150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 557 - 644
Target Start/End: Complemental strand, 9537206 - 9537120
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaa 644  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9537206 gtgccttagtggcggg-ttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtggcgggaattgcaa 9537120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 43407182 - 43407092
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  43407182 gtgccttagtggcggg-ttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 43407092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 8421966 - 8422043
Alignment:
Q  571 gggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||    
T  8421966 gggttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgccttagtggcggaaattgcaattat 8422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 557 - 648
Target Start/End: Original strand, 338499 - 338589
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  338499 gtgccttagtggcggg-ttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 338589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 521 - 636
Target Start/End: Original strand, 16075097 - 16075211
Alignment:
Q  521 tgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtg 620  Q
    ||||||| ||||||| ||| |||||||| | || | |||||| ||||||||| ||| ||  ||||||||||||||||||||||||| |||||| ||||||    
T  16075097 tgccttaatggcgggttaatatcatattactttgtggtgcctgagtggcgggattt-aggatgcattttcatgatcatgcatggcaaatgcatctgtgtg 16075195  T
Q  621 gtgtcttagtggcggg 636  Q
    ||||||||||||||||    
T  16075196 gtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 33007450 - 33007376
Alignment:
Q  574 ttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||| ||||||||| ||||||||| |||||||||| |||||||||  |||||||||||||||||||||||    
T  33007450 ttttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtggcgggaattgcaattat 33007376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||  | ||| || ||  || |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  165 aaatatgaattcatatggtaaaat 188  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 6836246 - 6836308
Alignment:
Q  510 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||| ||||||||||||||||||    
T  6836246 tttctatgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 6836308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 637
Target Start/End: Original strand, 25921879 - 25921958
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggga 637  Q
    ||||||||||| |||| |||| || | ||||||||||||||| |||| ||||||||| ||||||||| |||||||| ||||    
T  25921879 gtgcctaagtgacgggatttt-gtttacattttcatgatcatacatgacatatgcatctgtgtggtgccttagtggtggga 25921958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 636
Target Start/End: Original strand, 6836394 - 6836445
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    |||||| |||||||||||||||||||||| ||||||||| ||  ||||||||    
T  6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 6836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 584 - 623
Target Start/End: Complemental strand, 18472677 - 18472638
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtg 623  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  18472677 cattttcatgatcatgcatagcatatgcatctgtgtggtg 18472638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 537
Target Start/End: Original strand, 28561736 - 28561825
Alignment:
Q  446 tttgccttagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    ||||||| |||||||| || ||||||||| || |  |||| || |||||| ||||||||  ||||||||||||||||  | |||||||||||    
T  28561736 tttgcctaagtggtggctactttatttgactagg--tttgtctcagtggcaggttaatatcatatttctttgtggtgtttaagtggcgggat 28561825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 584 - 633
Target Start/End: Original strand, 28561834 - 28561885
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatt--tgtgtggtgtcttagtggc 633  Q
    ||||||||||||||||||||  |||||||||  ||||||||| |||||||||    
T  28561834 cattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtggc 28561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 312 - 648
Target Start/End: Original strand, 16975453 - 16975801
Alignment:
Q  312 tgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggtt 411  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975453 tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggtt 16975552  T
Q  412 cacgtggatgatgatgtgttaatatctgactgtatttg------------ccttagtggtgggtattttatttgattatgcatttgccttagtggcgggt 499  Q
    || |||||||||||||||||||||| ||||| ||||||            ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  16975553 catgtggatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggtattttatttgattatgcgtttgccttagtggcgggt 16975652  T
Q  500 taataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16975653 taataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatc 16975752  T
Q  600 catggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  16975753 catggcatatgcatctgtgtggtgccatagtggcgggaattgcaattat 16975801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 66 - 449
Target Start/End: Complemental strand, 5004970 - 5004619
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgatagataatgttatgtatgatag 265  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||              
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtat----gataatgtta---------- 5004785  T
Q  266 ataatgttatgtggaatgacagttattttatttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaa 365  Q
             |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  5004784 ---------tgtggaatgacatttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaa 5004695  T
Q  366 tgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    |||        ||||| |||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||    
T  5004694 tga--------aaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatcttactgtatttg 5004619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 46404861 - 46404633
Alignment:
Q  18 agactgatgaaggtgcattgagggtttcactaggaggtaaaacatttgaggtaagggcttttt-ccccatacggtcttattaagtattaggattatgtta 116  Q
    ||||||||| | ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |||||| |||||||||||||    
T  46404861 agactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggcttttttccccatacgttcttactaagtactaggattatgtta 46404762  T
Q  117 tgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404761 tgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagttta 46404662  T
Q  217 attatattttatatgatgtctgtatgata 245  Q
    ||||||||||||||||| |||||||||||    
T  46404661 attatattttatatgatatctgtatgata 46404633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 65 - 245
Target Start/End: Original strand, 16975252 - 16975433
Alignment:
Q  65 gaggtaagggctttttcccc-atacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    ||||||||||||||| |||| ||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 16975433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 5004610 - 5004445
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  5004610 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggc-gggttttagtc 5004512  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  5004511 tgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 5004445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 376 - 636
Target Start/End: Complemental strand, 11937839 - 11937566
Alignment:
Q  376 gaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttgc------------cttagtggtgggt 463  Q
    |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||  ||| ||| |||||            ||||||||  |||    
T  11937839 gaaatatgagttttatgaaaatattttattttggttcatgtggatgatgatgtgttaatacatgattgtgtttgcttatgaggttgccttagtggcaggt 11937740  T
Q  464 attttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccta 563  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  11937739 attttatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtggtgccttagtggcgggataatatcatattgcattgttgtgccta 11937640  T
Q  564 agtggcggggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    |||||   || |||||| | |||| || ||||||||||| | |||||||||||||||||||| ||  ||||||||    
T  11937639 agtgg-ttggatttagttttcattgtttatgatcatgcattagcatatgcatttgtgtggtgcctgtgtggcggg 11937566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 16475278 - 16475381
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||| | |||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16475278 aggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 16475377  T
Q  166 aata 169  Q
    ||||    
T  16475378 aata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 46404478 - 46404326
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||| ||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||||| |||||||     
T  46404478 tttgccttcgtggcgggttaataatatatttctttgtgg-------------ggataacatcatattgcattattgtgccttagtggcggg-ttttagtg 46404393  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||| |  |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  46404392 tgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 46404326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 11968053 - 11967965
Alignment:
Q  153 acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtat 241  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  11968053 acaaaaaatctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat 11967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 7336509 - 7336419
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  7336509 gtgccttagtggcggg-ttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 7336419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 46404615 - 46404537
Alignment:
Q  295 atttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatgaaaatat 374  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  46404615 atttttctattcatatatgtttttgtggtattgtaa-agaagtgttagactttgctgataaactaaataaatgaaaatat 46404537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 46404546 - 46404487
Alignment:
Q  390 atgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  46404546 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 46404487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 508 - 623
Target Start/End: Original strand, 9104522 - 9104637
Alignment:
Q  508 tatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgca-tggca 606  Q
    ||||||| ||||||||||| ||||| ||  || |||||||||| || ||||||||||||||| | | |||||||| |||||||||||||||||| | |||    
T  9104522 tatttctgtgtggtgcctttgtggcaggtaaatatcatattgctttgttgtgcctaagtggc-gtgatttagtcttcattttcatgatcatgcattagca 9104620  T
Q  607 tatgcatttgtgtggtg 623  Q
    ||||||| |||||||||    
T  9104621 tatgcatctgtgtggtg 9104637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 585 - 648
Target Start/End: Complemental strand, 43277834 - 43277771
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||    
T  43277834 attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattat 43277771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 153  Q
    ||||||||| |||||||||||||| | ||| ||||| |||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 553
Target Start/End: Complemental strand, 17542508 - 17542446
Alignment:
Q  490 agtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    |||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  17542508 agtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 17542446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  77 ttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 170  Q
    ||||||||||||| ||||| ||||| |||||| | |||||| || ||| |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 510 - 572
Target Start/End: Complemental strand, 17542562 - 17542500
Alignment:
Q  510 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||| ||||||||||| ||||| ||  || ||||||||||||| ||||| ||||||||||||    
T  17542562 tttctgtgtggtgcctttgtggcaggtaaatatcatattgcattgttgtgtctaagtggcggg 17542500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  181 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 233  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  181 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 233  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 11967951 - 11967862
Alignment:
Q  279 gaatgacagttattttatttttctattcatatatgt--ttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatga 368  Q
    |||||||| ||||||||||||  ||| |||||||||  |||||||||||||  | |||||||||  | |||| |||||||||||| ||||||    
T  11967951 gaatgacatttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 180; Significance: 7e-97; HSPs: 3)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 65 - 374
Target Start/End: Original strand, 8839 - 9125
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgatagataatgttatgtatgata 264  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||||             
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtat----gataatgtta--------- 9025  T
Q  265 gataatgttatgtggaatgacagttatttta-tttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaata 363  Q
              |||||||||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9026 ----------tgtggaatgacatttattttattttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaata 9114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 482 - 572
Target Start/End: Original strand, 9184 - 9274
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9184 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgccttagtggcggg 9274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 9116 - 9175
Alignment:
Q  390 atgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||    
T  9116 atgaaaatatttcagattggtccatgtggatgatgatgtgttaatatctgactgtatttg 9175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 269 - 636
Target Start/End: Original strand, 49499191 - 49499572
Alignment:
Q  269 atgttatgtggaatgacagttattttatttttctattcatatatgttttt-gtggtattgttagagaagtgttagactttgctgataaactaaataaatg 367  Q
    |||||| || |||||||| ||||||||||||  ||| ||||||||||||| |||||||||  | ||||||||| || |||| |||||||||||| |||||    
T  49499191 atgttacgtagaatgacatttattttattttgatatgcatatatgttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatg 49499290  T
Q  368 aaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttgc------------cttag 455  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || | ||| |||||            |||||    
T  49499291 aaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttag 49499390  T
Q  456 tggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattat 555  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |    
T  49499391 tggcgggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtggtgccttagtggcgggatgatatcatattgcatttt 49499490  T
Q  556 tgtgcctaagtggcggggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||  || |||||||| |||| |||||||||||||| | |||||||||| ||||||||| ||  ||||||||    
T  49499491 tgtgcctaagtggc-tggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 49499572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 28969431 - 28969254
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||||| ||||||| ||||||  | || |||||| |||||| ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgata 28969254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 49499045 - 49499187
Alignment:
Q  99 agtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 198  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  199 ataaaagttattagtttaattatattttatatgatgtctgtat 241  Q
    |||||| ||||||||||||||||||||||||| |||| |||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat 49499187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 574 - 648
Target Start/End: Original strand, 55162561 - 55162635
Alignment:
Q  574 ttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  55162561 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 55162635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 560 - 648
Target Start/End: Original strand, 13652928 - 13653016
Alignment:
Q  560 cctaagtggcggggttttagtct-gcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  13652928 cctaagtggcggg-ttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattat 13653016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 560 - 648
Target Start/End: Original strand, 13661053 - 13661141
Alignment:
Q  560 cctaagtggcggggttttagtct-gcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||    
T  13661053 cctaagtggcggg-ttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattat 13661141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 507 - 648
Target Start/End: Original strand, 40459293 - 40459432
Alignment:
Q  507 atatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggca 606  Q
    ||||||||| ||||||||| ||||||||| ||  || |||||  ||  |||||||| ||||||||| ||||||  |||||||||||||||||||||| ||    
T  40459293 atatttcttagtggtgcctaagtggcgggttataattatattctatg-ttgtgccttagtggcggg-ttttaggttgcattttcatgatcatgcatgtca 40459390  T
Q  607 tatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||    
T  40459391 tatgcatctgtgtggtgccttagtggcgggatttgcaattat 40459432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 648
Target Start/End: Complemental strand, 28969045 - 28968964
Alignment:
Q  572 ggttttagtctgcattttcatgatcatgcatggcat-----atgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||| ||||||||||||||||||||||||||||     |||||| ||||||||| ||||||||||||||||||||||||    
T  28969045 ggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 28968964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 632
Target Start/End: Complemental strand, 2761849 - 2761801
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtgg 632  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2761849 cattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 69628 - 69690
Alignment:
Q  510 tttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||| ||||||||||| ||||||||  || ||||||||||||| ||||||||||||||||||    
T  69628 tttctgtgtggtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 69690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 41868570 - 41868655
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaaga 152  Q
    ||||||| |||||||||| |||||  | || ||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||    
T  41868570 aggtaagtgctttttccc-atacgtccatactaagtattaggatgatgttgtgaattagaagtagaaattcttgtctcttgaaaaga 41868655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 69712 - 69780
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    ||||||||||||||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  69712 tgccttagtggcgggttacgattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 69780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 636
Target Start/End: Original strand, 69782 - 69833
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||||||||||||||||| ||||||||| ||  ||||||||    
T  69782 attttcatgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 69833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 28969257 - 28969204
Alignment:
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgttttt 318  Q
    |||||| |||||| |||||||| |||||||||||| |||| |||||||||||||    
T  28969257 gataattttatgtagaatgacatttattttattttgctatgcatatatgttttt 28969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 615 - 648
Target Start/End: Original strand, 55162640 - 55162673
Alignment:
Q  615 tgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||| ||||||||||||||||||||||||    
T  55162640 tgtgtggtgccttagtggcgggaattgcaattat 55162673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 3e-93; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 268 - 623
Target Start/End: Complemental strand, 21491568 - 21491197
Alignment:
Q  268 aatgttatgtggaatgacagttattttatttttctattcatatatgttttt---gtggtattgttagagaagtgttagactttgctgataaactaaataa 364  Q
    |||||||||| |||||||| ||||||||||||  ||| |||||||||||||   |||||||||  | ||||||||| || |||| |||||||||||| ||    
T  21491568 aatgttatgtagaatgacatttattttattttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaa 21491469  T
Q  365 atgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttgc------------ct 452  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| |||||            ||    
T  21491468 atgaaaatatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgaggttgcct 21491369  T
Q  453 tagtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcat 552  Q
    |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  21491368 tagtggcgggtattttatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtggtgccttagtggcgggagaatatcatattgcat 21491269  T
Q  553 tattgtgcctaagtggcggggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatttgtgtggtg 623  Q
    | |||||||||||||||  || |||||||| |||| |||||||||||||| | |||||||||| |||||||||    
T  21491268 tgttgtgcctaagtggc-tggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtg 21491197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 67 - 245
Target Start/End: Complemental strand, 15874186 - 15874008
Alignment:
Q  67 ggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgata 15874008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 268 - 623
Target Start/End: Complemental strand, 18367401 - 18367031
Alignment:
Q  268 aatgttatgtggaatgacagttattttatttttctattcatatatgttttt--gtggtattgttagagaagtgttagactttgctgataaactaaataaa 365  Q
    ||||||| || |||||||| ||||||||||||  ||| |||||||||||||  |||||||||  | ||||||||| || |||| |||||||||||| |||    
T  18367401 aatgttacgtagaatgacatttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaa 18367302  T
Q  366 tgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtat------------ttgcctt 453  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||  |||||||||||||||||||| |||| ||| |            |||||||    
T  18367301 tgaaaatatagaaatatgagatttataaaaatatttcattttggttcatatggatgatgatgtgttaatacctgattgtgtttggttatgaggttgcctt 18367202  T
Q  454 agtggtgggtattttatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    ||||| |||||||||| |||| |||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||    
T  18367201 agtggcgggtattttaattgactatgcatttgtcttaggggcgggttaataatagatttctgtgtggtgccttagtggcaggataatatcatattgcatt 18367102  T
Q  554 attgtgcctaagtggcggggttttagtctgcatt-ttcatgatcatgca-tggcatatgcatttgtgtggtg 623  Q
     |||| ||||||||||  || |||| ||| |||| |||||||||| ||| | ||||||| ||||||||||||    
T  18367101 gttgtccctaagtggc-tggatttaatcttcattgttcatgatcacgcattagcatatgtatttgtgtggtg 18367031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 468 - 623
Target Start/End: Original strand, 22077977 - 22078132
Alignment:
Q  468 tatttgattatgcatttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtg 567  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatatatctctttgtggtgccttagtggcgggataacatcatattgcattgttgtgcctaagtg 22078076  T
Q  568 gcggggttttagtctgcattttcatgatcatgca-tggcatatgcatttgtgtggtg 623  Q
    || ||| |||||||| |||||||||||||||||| | |||||||||| |||||||||    
T  22078077 gc-gggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtg 22078132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 75 - 235
Target Start/End: Complemental strand, 21491739 - 21491577
Alignment:
Q  75 ctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 172  Q
    |||||| ||||||||  | || |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  173 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 235  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 21491577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 22077631 - 22077810
Alignment:
Q  64 tgaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 163  Q
    ||||||||||||||||| |||||| | || || |||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||  ||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaact 22077728  T
Q  164 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgata 22077810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaac-aaaac--aa 161  Q
    ||||||||||||||||||| |||||  | || |||| | |||||  ||||||||||||| |||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  162 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 227  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 482 - 648
Target Start/End: Complemental strand, 15873852 - 15873700
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||| ||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||||| |||||||     
T  15873852 tttgccttcgtggcgggttaataatatatttctttgtgg-------------ggataacatcatattgcattattgtgccttagtggcggg-ttttagtg 15873767  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||| || |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  15873766 tgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 15873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 66 - 245
Target Start/End: Original strand, 48576332 - 48576509
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||||||||||||||||||||  | || |||||| | |||| |||||||||||||||||||||||||||| || ||| |||||   |||| || |||    
T  48576332 aggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag---aaaataattaa 48576428  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgtatgata 245  Q
    |||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  48576429 aatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgata 48576509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 508 - 648
Target Start/End: Complemental strand, 11036210 - 11036071
Alignment:
Q  508 tatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcatg-gca 606  Q
    ||||||| ||||||||||| |||||| |  || ||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||  |||    
T  11036210 tatttctgtgtggtgcctt-gtggcgagtaaatatcatattgcattgttgtgcctaagtggcgggattt-agtcttcattttcatgatcatgcattagca 11036113  T
Q  607 tatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  11036112 tatgcatctctgtggtgccttagtggcgggaattgcaattat 11036071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 10288606 - 10288516
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10288606 gtgccttagtggcggg-ttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 10288516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 15873988 - 15873911
Alignment:
Q  296 tttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatgaaaatat 374  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  15873988 tttttctattcatatatgtttttgtggtattgtaa-agaagtgttagactttgctgataaactaaataaatgaaaatat 15873911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 557 - 648
Target Start/End: Original strand, 40106201 - 40106291
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  40106201 gtgccttagtggcgga-ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattat 40106291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 483 - 648
Target Start/End: Complemental strand, 12911581 - 12911418
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtct 582  Q
    ||||||||||| | ||||||||  ||||||||| ||||||||| ||||||||| ||  || ||||| |  | | || ||| ||||||||| |||||||||    
T  12911581 ttgccttagtgacaggttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt-ctgtgtggtaccttagtggcggg-ttttagtct 12911484  T
Q  583 gcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||| |||||| ||||||||||||| ||||||||| ||||||||  ||||||||||||||    
T  12911483 gcattttcataatcatgtatggcatatgcatctgtgtggtgccttagtggtaggaattgcaattat 12911418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 575 - 648
Target Start/End: Complemental strand, 12196494 - 12196421
Alignment:
Q  575 tttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  12196494 tttagtctgcattttcatgatcatacatggcatattcatctgtgtggtgccttagtggcgggaattgcaattat 12196421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 49170102 - 49170026
Alignment:
Q  574 ttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtgg-tgtcttagtgg-cgggaattgcaattat 648  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||    
T  49170102 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggatgccttagtggccgggaattgcaattat 49170026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 15873920 - 15873861
Alignment:
Q  390 atgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  15873920 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 15873861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 66 - 202
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    |||||||||||||||||||| ||| ||||| |||||  ||||  | |||||| || ||| ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  166 aatatgaattcatatggtaaaatttaaccttttataa 202  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 48654479 - 48654339
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    |||||||||| ||||||||||||||  | || |||||| |||||| ||||| ||||||||| ||| | |||||||||| ||| |||||  ||||||||||    
T  48654479 gaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--aaaacaacta 48654382  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagtt 207  Q
    ||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654381 aaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 9993633 - 9993697
Alignment:
Q  508 tatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||||| ||||||||||| |||| |||  || ||||||||||||| ||||||||||||||||||    
T  9993633 tatttctgtgtggtgcctttgtggtgggtaaatatcatattgcattgttgtgcctaagtggcggg 9993697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 534
Target Start/End: Complemental strand, 12196548 - 12196497
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgg 534  Q
    |||||||||||| ||||||||| ||||| ||| |||||||||||||||||||    
T  12196548 ttgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcgg 12196497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 48653648 - 48653595
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    |||||||||||||||||||   |||| ||||||||||||||| |||||||||||    
T  48653648 tgccttagtggcgggttaaacttataattctttgtggtgcctaagtggcgggat 48653595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 48653586 - 48653534
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    |||||||||||||||||||  ||||||||| ||||||||||||  ||||||||    
T  48653586 cattttcatgatcatgcataacatatgcatctgtgtggtgtctgtgtggcggg 48653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 153  Q
    |||||||||||||||||||||||  ||||| |||||   |||| |||||||| || ||| |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 22077807 - 22077860
Alignment:
Q  265 gataatgttatgtggaatgacagttattttatttttctattcatatatgttttt 318  Q
    ||||||||||||| |||||||| ||  |||||||| |||| |||||||||||||    
T  22077807 gataatgttatgtagaatgacatttgctttattttcctatgcatatatgttttt 22077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 6e-79; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 47 - 450
Target Start/End: Complemental strand, 4558241 - 4557859
Alignment:
Q  47 ctaggaggtaaaacatttgaggtaagggctttttccccatacggtct-tattaagtattaggattatgttatgaattagaggtagagattcttgtctgtt 145  Q
    |||||||||||||| |  ||||||||||||||||||| ||||| ||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacg-tctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgtt 4558144  T
Q  146 gaaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgat 244  Q
    || |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||       
T  4558143 gagaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtat--- 4558047  T
Q  245 agataatgttatgtatgatagataatgttatgtggaatgacagttattttatttttctattcatatatg--tttttgtggtattgttagagaagtgttag 342  Q
      ||||||||| |||                   |||||||  ||||||||||||  ||| ||||||||  ||||||||||||||  | ||||||||| |    
T  4558046 -aataatgttacgta-------------------gaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttgg 4557967  T
Q  343 actttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgact 442  Q
    | |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||| |    
T  4557966 attttgttgataaactaaagaaatgaaaatatataaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatatgttaatacctgatt 4557867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  67 ggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 166  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  167 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 536895 - 536993
Alignment:
Q  147 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgata 536993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 482 - 648
Target Start/End: Original strand, 537149 - 537301
Alignment:
Q  482 tttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtc 581  Q
    |||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||| ||||||||| |||||||     
T  537149 tttgccttagtggcgggttaataatatatttctttgtgg-------------ggataacatcatattgcattattgtgccttagtggcggg-ttttagtg 537234  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||||||||| || |||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  537235 tgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 483 - 636
Target Start/End: Complemental strand, 4557850 - 4557694
Alignment:
Q  483 ttgccttagtggcgggt--taataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagt 580  Q
    |||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||  || ||||||    
T  4557850 ttgccttagtggcgggtattaataatatatttctgtgtggtgccttagtggcgcgataatatcatattgcattgttgtgcctaagtggc-tggatttagt 4557752  T
Q  581 ctgcatt-ttcatgatcatgca-tggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    || |||| |||||||||||||| | |||||||||| | ||||||| ||  ||||||||    
T  4557751 cttcattgttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcggg 4557694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 537013 - 537090
Alignment:
Q  296 tttttctattcatatatgtttttgtggtattgttagagaagtgttagactttgctgataaactaaataaatgaaaatat 374  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  537013 tttttctattcatatatgtttttgtggtattgtaa-agaagtgttagactttgctgataaactaaataaatgaaaatat 537090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 483 - 648
Target Start/End: Original strand, 30910117 - 30910279
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcat-tattgtgcctaagtggcggggttttagtc 581  Q
    |||||||||||||  |||||||  ||||||||| ||||||||| ||||||||| ||  || |||||  || | | |||||| ||||||||   |||||||    
T  30910117 ttgccttagtggcaagttaatatcatatttcttagtggtgcctaagtggcgggttataattatatt--atgtgtggtgccttagtggcgga--tttagtc 30910212  T
Q  582 tgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  30910213 tgcatttccatgatcatgcatggcatatgcatctgtgtggtctcttagtagcgggaattgcaattat 30910279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 571 - 648
Target Start/End: Original strand, 40691279 - 40691356
Alignment:
Q  571 gggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||| ||||||||||||    
T  40691279 gggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggtgccttattggcggaaattgcaattat 40691356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 483 - 648
Target Start/End: Original strand, 38001301 - 38001461
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtct 582  Q
    |||||||||||||||||||||| ||||| ||  |||||||| ||||||||| | ||  || ||||| |  | | ||| || ||||||||| ||||| |||    
T  38001301 ttgccttagtggcgggttaatattatatatccgtgtggtgctttagtggcgagttataattatatt-ctgtgtggtgtcttagtggcggg-ttttaatct 38001398  T
Q  583 gcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||  ||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  38001399 gcattttcatgatc--gcatgacatatgcatctgtgtggtgtc-tagtggcgggaattgcaattat 38001461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 449
Target Start/End: Original strand, 537081 - 537140
Alignment:
Q  390 atgaaaatatttcagtttggttcacgtggatgatgatgtgttaatatctgactgtatttg 449  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  537081 atgaaaatatttcagtttggtccatgtggatgatgatgtgttaatatctgactgtatttg 537140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 6309116 - 6309184
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  6309116 tgccttagtggcgggttactattatatt-ctgtgtggtgccttagtggcgggttaatatcatattgcatt 6309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 585 - 636
Target Start/End: Original strand, 6309186 - 6309237
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  6309186 attttcatgatcatgcatggcatatgcatctgtgtggtgtctgtgtggcggg 6309237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 153  Q
    |||||||||||||||||||||||| | ||| |||||  ||||||| |||||| || ||| ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 6308625 - 6308710
Alignment:
Q  68 gtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 153  Q
    ||||||||||||| |||||| | ||||||||| | |||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  6308625 gtaagggcttttttcccataggttcttattaaatgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaa 6308710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 25101669 - 25101617
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||  ||||||||    
T  25101669 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 636
Target Start/End: Complemental strand, 25160762 - 25160710
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||  ||||||||    
T  25160762 cattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Original strand, 42861770 - 42861823
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  42861770 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 42861823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 621
Target Start/End: Original strand, 42861832 - 42861869
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtgg 621  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  42861832 cattttcatgatcatgcatagcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 535
Target Start/End: Original strand, 6309083 - 6309130
Alignment:
Q  487 cttagtggcgggttaataatatatttctttgtggtgccttagtggcggg 535  Q
    ||||||||||||||| || |||||| || ||||||||||||||||||||    
T  6309083 cttagtggcgggttactattatatt-ctgtgtggtgccttagtggcggg 6309130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 5e-64; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 217  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 483 - 648
Target Start/End: Complemental strand, 18292582 - 18292419
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtct 582  Q
    |||||||||||| ||||||||| ||||| ||| || ||||||||||||||||| ||  || |||||   |  | |||||| ||||||||| |||||||||    
T  18292582 ttgccttagtggtgggttaatattatatatctgtggggtgccttagtggcgggttataattatattttgtg-tggtgccttagtggcggg-ttttagtct 18292485  T
Q  583 gcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18292484 gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 18292419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 40729242 - 40729152
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||||||    
T  40729242 gtgccttagtggcggg-ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggtggaaattgcaattat 40729152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 520 - 637
Target Start/End: Complemental strand, 28266964 - 28266847
Alignment:
Q  520 gtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgt 619  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||  ||||| ||| |||||||| |||||| ||||||||||||||||||||||| | |||    
T  28266964 gtgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggc-gggatttagtcttcattttaatgatcatgcatggcatatgcatctatgt 28266866  T
Q  620 gg-tgtcttagtggcggga 637  Q
    || ||||||||||||||||    
T  28266865 ggatgtcttagtggcggga 28266847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 557 - 648
Target Start/End: Original strand, 40447872 - 40447962
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  40447872 gtgccttagtggcggg-ttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattat 40447962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 41340068 - 41339978
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  41340068 gtgccttagtggcggg-ttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattat 41339978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 557 - 648
Target Start/End: Complemental strand, 34397632 - 34397544
Alignment:
Q  557 gtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    |||||| ||||||||| ||||||||||||||  ||||||||||||||| |||||||| ||||||||| ||||||||| | ||||||||||||    
T  34397632 gtgccttagtggcggg-ttttagtctgcatt--catgatcatgcatggtatatgcatctgtgtggtgccttagtggcagaaattgcaattat 34397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 520 - 628
Target Start/End: Complemental strand, 12774244 - 12774137
Alignment:
Q  520 gtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgt 619  Q
    |||||||||||||||||||| |||||||  | || | |||||||||||||||| ||   |  | ||||||||||||||||||| |||||||||| |||||    
T  12774244 gtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgatt-cattttcatgatcatgcatcgcatatgcatctgtgt 12774146  T
Q  620 ggtgtctta 628  Q
    |||| ||||    
T  12774145 ggtgcctta 12774137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 165  Q
    ||||||||||||||||||||||||  | ||  ||||| |||||| ||||| ||||||||| ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  166 aatat 170  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  133 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 225  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 1193598 - 1193765
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||| ||| | ||||| |||||  ||| | | |||||| ||  || |||||  |||||||||| |||||||||| ||||||| ||    
T  1193598 gaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 1193696  T
Q  165 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 233  Q
    ||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193697 aaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 626
Target Start/End: Complemental strand, 35670541 - 35670499
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtgtct 626  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  35670541 cattttcatgatcatgcatagcatatgcatctgtgtggtgtct 35670499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 12774243 - 12774190
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    ||||||||||||||| |||||  |||| |||||||||||||| |||||||||||    
T  12774243 tgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggat 12774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 44788932 - 44789000
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggataacatcatattgcatt 553  Q
    ||||||||||| ||||||  | |||||| || |||||||||||||||||||| ||| |||||||||||||    
T  44788932 tgccttagtggagggttacaattatatt-ctgtgtggtgccttagtggcgggctaatatcatattgcatt 44789000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 636
Target Start/End: Original strand, 44789002 - 44789053
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggg 636  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||  ||||||||    
T  44789002 attttcatgatcatgcaaggcatatgcatctgtgtggtgcctgtgtggcggg 44789053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 602
Target Start/End: Original strand, 29270993 - 29271078
Alignment:
Q  516 tgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgcat 602  Q
    |||||||||||||||| ||| ||| |||||||||| ||   ||||||||||| | ||| |||| | | |||||||||||||||||||    
T  29270993 tgtggtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgac-gggatttaattttcattttcatgatcatgcat 29271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 537
Target Start/End: Complemental strand, 36732043 - 36731989
Alignment:
Q  483 ttgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    ||||||||| ||||||||||||  ||||||||| ||| ||||| |||||||||||    
T  36732043 ttgccttaggggcgggttaatatcatatttcttagtgatgcctaagtggcgggat 36731989  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 35670603 - 35670550
Alignment:
Q  484 tgccttagtggcgggttaataatatatttctttgtggtgccttagtggcgggat 537  Q
    |||||||||||||||||||   |||| |||||||||||||||  ||||||||||    
T  35670603 tgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggat 35670550  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 572
Target Start/End: Original strand, 44788866 - 44788910
Alignment:
Q  528 gtggcgggataacatcatattgcattattgtgcctaagtggcggg 572  Q
    ||||||||  || ||||||||||||| ||||||||||||||||||    
T  44788866 gtggcgggtaaatatcatattgcattgttgtgcctaagtggcggg 44788910  T

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Target: scaffold1838 (Bit Score: 88; Significance: 6e-42; HSPs: 3)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 221 - 353
Alignment:
Q  111 atgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 210  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  211 agtttaattatattttatatgatgtctgtatgata 245  Q
    ||||||||||||||||||||||||| |||||||||    
T  319 agtttaattatattttatatgatgtgtgtatgata 353  T

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Target: scaffold1838; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 573 - 648
Target Start/End: Original strand, 592 - 667
Alignment:
Q  573 gttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||| || |||||||| |||||||||||||||    
T  592 gttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgatgccttagtggtgggaattgcaattat 667  T

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Target: scaffold1838; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 463
Target Start/End: Original strand, 514 - 557
Alignment:
Q  420 tgatgatgtgttaatatctgactgtatttgccttagtggtgggt 463  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||    
T  514 tgatgatgtgttaatatttgactgtaattgccttagtggcgggt 557  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 571 - 648
Target Start/End: Complemental strand, 41958224 - 41958147
Alignment:
Q  571 gggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcgggaattgcaattat 648  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  41958224 gggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattat 41958147  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 528 - 623
Target Start/End: Complemental strand, 40841322 - 40841227
Alignment:
Q  528 gtggcgggataacatcatattgcattattgtgcctaagtggcggggttttagtctgcattttcatgatcatgca-tggcatatgcatttgtgtggtg 623  Q
    ||||||||  || ||||||||||||| ||||||||| || ||||| ||| ||||| |||||||||||||||||| | |||||||||| |||||||||    
T  40841322 gtggcgggtaaatatcatattgcattgttgtgcctatgttgcgggattt-agtcttcattttcatgatcatgcattagcatatgcatctgtgtggtg 40841227  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||||||||||||||||||||| ||||  ||||| |||||| | |||||| || ||| ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  165 aaatat 170  Q
    ||||||    
T  22816492 aaatat 22816487  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 44436526 - 44436592
Alignment:
Q  571 gggttttagtctgcattttcatgatcatgcatggcatatgcatttgtgtggtgtcttagtggcggga 637  Q
    ||||||||||||  |||||||||||||||| |||||||||||| ||||||||| ||  |||||||||    
T  44436526 gggttttagtctctattttcatgatcatgcttggcatatgcatctgtgtggtgcctgtgtggcggga 44436592  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  133 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 232  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  233 t 233  Q
    |    
T  35839268 t 35839268  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 623
Target Start/End: Complemental strand, 3189179 - 3189140
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtg 623  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  3189179 cattttcatgatcatgcatgacatatgcatttgtgtggtg 3189140  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 623
Target Start/End: Complemental strand, 22635772 - 22635733
Alignment:
Q  584 cattttcatgatcatgcatggcatatgcatttgtgtggtg 623  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  22635772 cattttcatgatcatgcatggcatatgcatctgtgtggtg 22635733  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 569
Target Start/End: Original strand, 35840649 - 35840710
Alignment:
Q  508 tatttctttgtggtgccttagtggcgggataacatcatattgcattattgtgcctaagtggc 569  Q
    ||||||| ||| ||||||| ||||||||  || ||||||||||||| |||||||||||||||    
T  35840649 tatttctgtgtcgtgcctttgtggcgggtaaatatcatattgcattgttgtgcctaagtggc 35840710  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 623
Target Start/End: Complemental strand, 22816064 - 22816026
Alignment:
Q  585 attttcatgatcatgcatggcatatgcatttgtgtggtg 623  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  22816064 attttcatgatcatgcatggcatatgcatctgtgcggtg 22816026  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  64 tgaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtc 141  Q
    ||||||||||| |||||||| ||||| ||||| |||||  ||||||  |||| |||| ||| |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  64 tgaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtc 141  Q
    ||||||||||| |||||||| ||||| ||||| |||||  ||||||  |||| |||| ||| |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

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Target: scaffold0120 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  66 aggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtc 141  Q
    |||||||||||||||||||||||| ||||| |||||  ||||| | |||||| || ||| |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 170
Target Start/End: Complemental strand, 243275 - 243170
Alignment:
Q  65 gaggtaagggctttttccccatacggtcttattaagtattaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 164  Q
    ||||||| ||| ||||||||||||  ||||| ||||| |||||  | |||||| || ||| ||||   |||||||||| |||||||||| ||||||| ||    
T  243275 gaggtaatggcgttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgtcttttgaaaagaagaaaacaatta 243176  T
Q  165 aaatat 170  Q
    ||||||    
T  243175 aaatat 243170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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