View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9286_low_6 (Length: 522)

Name: NF9286_low_6
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9286_low_6
NF9286_low_6
[»] chr5 (3 HSPs)
chr5 (2-517)||(14274676-14275189)
chr5 (339-438)||(39173529-39173628)
chr5 (319-373)||(10813151-10813205)
[»] chr3 (5 HSPs)
chr3 (5-449)||(51140100-51140542)
chr3 (292-450)||(40927306-40927464)
chr3 (326-373)||(52964156-52964203)
chr3 (326-373)||(54548333-54548380)
chr3 (332-373)||(38475645-38475686)
[»] chr6 (2 HSPs)
chr6 (5-445)||(21729765-21730200)
chr6 (169-445)||(14453339-14453611)
[»] chr1 (6 HSPs)
chr1 (289-445)||(14650984-14651137)
chr1 (289-445)||(14660775-14660928)
chr1 (5-273)||(14648327-14648593)
chr1 (326-373)||(28037673-28037720)
chr1 (319-373)||(33978188-33978242)
chr1 (319-372)||(27643376-27643429)
[»] chr2 (3 HSPs)
chr2 (171-436)||(8323479-8323741)
chr2 (319-376)||(4244400-4244457)
chr2 (293-373)||(36756962-36757042)
[»] scaffold0996 (1 HSPs)
scaffold0996 (292-373)||(1554-1635)
[»] chr4 (3 HSPs)
chr4 (320-373)||(5185486-5185539)
chr4 (316-373)||(38761390-38761447)
chr4 (294-373)||(54421415-54421494)
[»] chr8 (2 HSPs)
chr8 (292-372)||(11629494-11629574)
chr8 (319-372)||(16484161-16484214)
[»] chr7 (2 HSPs)
chr7 (292-371)||(513846-513925)
chr7 (321-373)||(27745736-27745788)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 2 - 517
Target Start/End: Complemental strand, 14275189 - 14274676
Alignment:
Q  2 cataatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacctcttgatggggaaatctgcccacctacacacctatata 101  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  14275189 cataatattccacaataacacattaggatatggaatgtgcttctggaactctgtgggccacttcttgatgggaaaatctgcccacctacacacctatata 14275090  T
Q  102 tttgtcctagaagcagaagctatcacatttctt-gaagcaatcaacatggctattttacgatcggtttccacaatgttatatttgaaaaggacaacaagt 200  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  14275089 tttgtcctagaagcataagctatcacatttttttgaagcaatcaacacggttatttcacgatcggtttccacaatgttatgtttgaaaaggacaacaagt 14274990  T
Q  201 cgcttgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgtaggggtctcttggcaaccaatttcgactttgt 300  Q
    |||||||||||||||||| | | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14274989 cgcttgcagaagccataagctcttcttcaacaatccacaatgagctcgggggcctgatagctcagtgtaggggtctcttggcaaccaatttcgactttgt 14274890  T
Q  301 agtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacat 400  Q
    ||||| ||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  14274889 agtgtcgttcattcgaaagcaagcaaatagagttgcacataggatagttagagcatccttatctcatcctagttctcatatctattatattgtaccacat 14274790  T
Q  401 gatttgtactctataattattaatgaaatgtattaattttgtttttactcnnnnnnnntatttaatagaaaagtattaagtatgatatgcacagggctga 500  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||        |||||||||||||||||| ||| ||||||||  ||||||| |    
T  14274789 gatttgtactctataattattaatgaaatgtattaattttaattttactc--aaaaaatatttaatagaaaagtatcaaggatgatatgtgcagggct-a 14274693  T
Q  501 tgttacgaactccaaac 517  Q
    |||||| || |||||||    
T  14274692 tgttacaaagtccaaac 14274676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 339 - 438
Target Start/End: Complemental strand, 39173628 - 39173529
Alignment:
Q  339 ataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaatt 438  Q
    |||| ||||||| ||||||||||||||||||||||  || ||||| ||||||| | ||||||||| |||||||||||||||||||||||||| |||||||    
T  39173628 atagcatagctaaagcatccttatctcatcctagccttcatatcttttatattgttccacatgatgtgtactctataattattaatgaaatgcattaatt 39173529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 10813205 - 10813151
Alignment:
Q  319 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    |||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  10813205 gcaagctaatagggttgctcatagtatagctagagcttccttatctcatcctagc 10813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 5 - 449
Target Start/End: Complemental strand, 51140542 - 51140100
Alignment:
Q  5 aatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacctcttgatggggaaatctgcccacctacacacctatatattt 104  Q
    |||||||||||| ||||   | |||||  ||||||| ||| | |||| |||||||||| ||||||||||||||||||||||||| ||| |||   |||||    
T  51140542 aatattccacaacaacacgataggatacagaatgtgtttccgaaactctgtgggccacttcttgatggggaaatctgcccaccttcactcctcagtattt 51140443  T
Q  105 gtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccacaatgttatatttgaaaaggacaacaagtcgct 204  Q
    |||||||||||||||||| |  |||| |||| ||||||||||| ||| |||| ||  | |||| |||||||||||| |||||||  |||| ||||| |||    
T  51140442 gtcctagaagcagaagctcttgcattgcttgcagcaatcaacacggccatttcac--ttggttaccacaatgttatgtttgaaactgacagcaagttgct 51140345  T
Q  205 tgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgtaggggtctcttggcaaccaatttcgactttgtagtg 304  Q
    |||||| |||||||   | |||||| || |||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||| |||||    
T  51140344 tgcagatgccataatttcttcttcatccttccacaatgagctcggggacctgctagttcagtgtaggggtctcttggctaccaacttcgactttatagtg 51140245  T
Q  305 ttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacatgatt 404  Q
    | ||| ||| |||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||| | | ||||| ||||||| || || |||||     
T  51140244 tcgtttattcggaagcaagcgaatagggttgcacatagcatagctagagcatccttatgccatcctagcccccatatcttttatattgtatcagatgatc 51140145  T
Q  405 tgtactctataattattaatgaaatgtattaattttgtttttact 449  Q
    |||||||||||||||||||||||||| ||||||| || |||||||    
T  51140144 tgtactctataattattaatgaaatgcattaattctgcttttact 51140100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 292 - 450
Target Start/End: Complemental strand, 40927464 - 40927306
Alignment:
Q  292 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatatt 391  Q
    |||||||||||||| ||| ||| | | ||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| | | | ||| | |||||||    
T  40927464 cgactttgtagtgtcgtttattcgaaggcaagcaaatagggttgcatatagcataactagagcatccttatgtcatcctatcccccatattttttatatt 40927365  T
Q  392 ctaccacatgatttgtactctataattattaatgaaatgtattaattttgtttttactc 450  Q
     ||||| ||||| |||||||||||||||||||||||||| ||||| | || ||||||||    
T  40927364 gtaccagatgatctgtactctataattattaatgaaatgcattaactatgcttttactc 40927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 52964203 - 52964156
Alignment:
Q  326 aatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||||||||| ||||| ||||||||| | ||||||||||||||||||    
T  52964203 aatagggttgctcatagtatagctagatcttccttatctcatcctagc 52964156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Complemental strand, 54548380 - 54548333
Alignment:
Q  326 aatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||||||    
T  54548380 aatagagttgctcatagtatagctagagcttccttatctcatcctagc 54548333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 38475645 - 38475686
Alignment:
Q  332 gttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||    
T  38475645 gttgcacatagtataactagagcatccttatctcaccctagc 38475686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 5 - 445
Target Start/End: Complemental strand, 21730200 - 21729765
Alignment:
Q  5 aatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacctcttgatggggaaatctgcccacctacacacctatatattt 104  Q
    |||||||||||||||||   | |||||   |||||| |||  ||||| | |||||||| ||||||||||||| ||||||||| | ||| |||   |||      
T  21730200 aatattccacaataacacggtaggatacaaaatgtgtttccagaactctttgggccacttcttgatggggaattctgcccacattcactcctcagtatca 21730101  T
Q  105 gtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccacaatgttatatttgaaaaggacaacaagtcgct 204  Q
    |||||||||| |||||||||  |||| |||| ||||||||||| | |||||  ||  | |||| |||||||||||| |||||||  ||||||||||| ||    
T  21730100 gtcctagaagtagaagctattgcattgcttgcagcaatcaacacgactattccac--ttggttaccacaatgttatgtttgaaacagacaacaagtcact 21730003  T
Q  205 tgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgtaggggtctcttggcaaccaatttcgactttgtagtg 304  Q
    |||||| |||||||||   |||||| |  | ||||  ||||| ||||||||| ||| |||| ||||||| |||||| | ||   ||||||||||||||||    
T  21730002 tgcagatgccataaactattcttcacctttacacaacgagcttggggacctgctagttcagagtaggggcctcttgtctac---tttcgactttgtagtg 21729906  T
Q  305 ttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattatattctaccacatgatt 404  Q
    | ||||||| ||| |||| |||||| |||||||||||| ||||||| | |||||||||||||||||||| | | ||||| ||||||| |||||||||||     
T  21729905 tcgttcattcggaggcaaccaaataaggttgcacatagcatagctacaacatccttatctcatcctagcccccatatcttttatattgtaccacatgatg 21729806  T
Q  405 tgtactctataattattaatgaaatgtattaattttgtttt 445  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  21729805 tgtactctataattattaatgaaatgcattaattatgtttt 21729765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 169 - 445
Target Start/End: Complemental strand, 14453611 - 14453339
Alignment:
Q  169 ccacaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgt 268  Q
    |||||||||||| |||||||  |||| ||||||||||||||| ||||||||| | ||||||  | ||||||  ||||| ||||||||| ||| |||||||    
T  14453611 ccacaatgttatgtttgaaacagacagcaagtcgcttgcagatgccataaactcttcttcactcttccacaacgagcttggggacctgctagttcagtgt 14453512  T
Q  269 aggggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcac----ataggatagctagagcatccttatct 364  Q
    ||||  |||||||| ||   ||||||||||||||||||||||||| ||| ||||||||||| ||||||||    |||| |||||||||||||||||||||    
T  14453511 agggccctcttggctac---tttcgactttgtagtgttgttcattcggaggcaagcaaataaggttgcacatatatagtatagctagagcatccttatct 14453415  T
Q  365 catcctagctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaattttgtttt 445  Q
    ||||||||| | | ||||| ||||||| || |||||||| |||||||     |||||||||||||||||||||| ||||||    
T  14453414 catcctagcccccatatcttttatattgtaacacatgatgtgtactc-----ttattaatgaaatgtattaattctgtttt 14453339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 289 - 445
Target Start/End: Original strand, 14650984 - 14651137
Alignment:
Q  289 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 388  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14650984 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14651080  T
Q  389 attctaccacatgatttgtactctataattattaatgaaatgtattaattttgtttt 445  Q
    ||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  14651081 attataccacatgatgtgtactctataattattaatgaaatgcattaattctgtttt 14651137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 289 - 445
Target Start/End: Original strand, 14660775 - 14660928
Alignment:
Q  289 tttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctctcttatctattat 388  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||||||   |||||||||||||| | | ||||| ||||    
T  14660775 tttcgactttgtagtgtcgttcattcggaggcaagcaaataaggttgcacatagcatagctagagcat---tatctcatcctagcccccatatcttttat 14660871  T
Q  389 attctaccacatgatttgtactctataattattaatgaaatgtattaattttgtttt 445  Q
    ||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  14660872 attataccacatgatgtgtactctataattattaatgaaatgcattaattctgtttt 14660928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 14648327 - 14648593
Alignment:
Q  5 aatattccacaataacatatttggatatggaatgtgcttctggaactttgtgggccacctcttgatggggaaatctgcccacctacacacctatatattt 104  Q
    |||||||||||||||||   | ||||| |||||||| ||| | || | |||||||||| ||||||||||||||||||| ||||| |||  ||   |||      
T  14648327 aatattccacaataacacggtaggatacggaatgtgtttccgaaaatctgtgggccacttcttgatggggaaatctgcacaccttcacttctcagtatca 14648426  T
Q  105 gtcctagaagcagaagctatcacatttcttgaagcaatcaacatggctattttacgatcggtttccacaatgttatatttgaaaaggacaacaagtcgct 204  Q
    || |||||||||||||||||  |||| |||| ||||||||||| |||||||| ||  | |||| |||||||||| | |||||||  |||| |||||||||    
T  14648427 gtactagaagcagaagctattgcattgcttgcagcaatcaacacggctatttcac--ttggttaccacaatgttctgtttgaaacagacagcaagtcgct 14648524  T
Q  205 tgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgtagggg 273  Q
    |||||| ||||||||| | |||||| || ||||||  ||||| ||||||||| ||| ||||||||||||    
T  14648525 tgcagatgccataaactcttcttcacccttccacaacgagcttggggacctgctagttcagtgtagggg 14648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 28037673 - 28037720
Alignment:
Q  326 aatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  28037673 aatagggttgctcatagtatagctagagcttctttatctcatcctagc 28037720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 33978242 - 33978188
Alignment:
Q  319 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  33978242 gcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 33978188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 27643429 - 27643376
Alignment:
Q  319 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 372  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  27643429 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 27643376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 171 - 436
Target Start/End: Complemental strand, 8323741 - 8323479
Alignment:
Q  171 acaatgttatatttgaaaaggacaacaagtcgcttgcagaagccataaacccctcttcaaccatccacactgagctcggggacctgatagctcagtgtag 270  Q
    |||||||||| |||||||  || | ||||| ||||||||| ||||||||  | |||||| |  | ||||  ||||| ||||||||| ||| |||||||||    
T  8323741 acaatgttatgtttgaaacagagagcaagttgcttgcagatgccataaattcttcttcacctttacacaacgagcttggggacctgctagttcagtgtag 8323642  T
Q  271 gggtctcttggcaaccaatttcgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcct 370  Q
    |||||||||||  ||   ||||||||||||||| | ||||||| | |  ||| ||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  8323641 gggtctcttggttac---tttcgactttgtagtatcgttcattcgaagacaaacaaataaagttgcacatagcataactagagcatccttatctcatcct 8323545  T
Q  371 agctctcttatctattatattctaccacatgatttgtactctataattattaatgaaatgtattaa 436  Q
    | | | | ||||| ||||| | | ||||||||| ||||| |||||||||||||||||||| |||||    
T  8323544 aacccccatatcttttataatgttccacatgatgtgtacgctataattattaatgaaatggattaa 8323479  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 4244400 - 4244457
Alignment:
Q  319 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagctct 376  Q
    |||||||||||| | ||| ||||| |||||||||||||| ||||||||||||||||||    
T  4244400 gcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcctagctct 4244457  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 36757042 - 36756962
Alignment:
Q  293 gactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||||||||||| ||| ||| ||| |||||| ||||  ||||| ||||| || |||||||| |||||||| |||||||||    
T  36757042 gactttgtagtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagc 36756962  T

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Target: scaffold0996 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 373
Target Start/End: Complemental strand, 1635 - 1554
Alignment:
Q  292 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||||    
T  1635 cgactttgtagtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagc 1554  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 5185539 - 5185486
Alignment:
Q  320 caagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||    
T  5185539 caagctaatagggttgctcatagtatagctagagcttccttatctcatcttagc 5185486  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 38761447 - 38761390
Alignment:
Q  316 gaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    ||||||||| |||| |||||| ||||| || |||||||||||||||||||| ||||||    
T  38761447 gaagcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctagc 38761390  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 54421494 - 54421415
Alignment:
Q  294 actttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    |||||||||||| ||| ||| ||| |||||| |||| |||||  ||||| || |||||||| |||||||| |||||||||    
T  54421494 actttgtagtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagc 54421415  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 11629494 - 11629574
Alignment:
Q  292 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 372  Q
    |||||||||||||| ||   || ||| |||||||||||| ||||| ||||| || ||||||||||| |||||||| |||||    
T  11629494 cgactttgtagtgtcgtatgttaggaggcaagcaaatagagttgctcatagtattgctagagcatcattatctcaccctag 11629574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 16484214 - 16484161
Alignment:
Q  319 gcaagcaaatagggttgcacataggatagctagagcatccttatctcatcctag 372  Q
    |||||| |||| |||||| ||||| || |||||||||||||||||||| |||||    
T  16484214 gcaagctaataaggttgctcatagtattgctagagcatccttatctcaccctag 16484161  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 513846 - 513925
Alignment:
Q  292 cgactttgtagtgttgttcattgggaagcaagcaaatagggttgcacataggatagctagagcatccttatctcatccta 371  Q
    |||||||||||||| ||   || ||| |||||| ||||||||||| ||||| || |||||||| ||||||| ||||||||    
T  513846 cgactttgtagtgtcgtatgtttggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatccta 513925  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 373
Target Start/End: Complemental strand, 27745788 - 27745736
Alignment:
Q  321 aagcaaatagggttgcacataggatagctagagcatccttatctcatcctagc 373  Q
    |||| |||| |||||| ||||| || |||||||||||||||||||| ||||||    
T  27745788 aagctaataaggttgctcatagtatcgctagagcatccttatctcaccctagc 27745736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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