View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9286_low_7 (Length: 510)
Name: NF9286_low_7
Description: NF9286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9286_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 207 - 497
Target Start/End: Original strand, 14145437 - 14145726
Alignment:
| Q |
207 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgatgtttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14145437 |
accatggtttgagccctattgaatggaatgtgatttttcttgctttgttgtttaaagttctttgttaaagtgtttttaatcgtcaatgtgagcataaatg |
14145536 |
T |
|
| Q |
307 |
tgaaggnnnnnnnnttgtaattgaatcatgatgannnnnnnngcgattttgaaaatatttcaaaaatatgctttaaacggttagatatttatttaatcgg |
406 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14145537 |
tgaaggaaaaaaa-ttgtaattgaatcatgatgattttttttgcgattttgaaaatatttcaaaaatatgctttaaacggttagatatttatttaaccgg |
14145635 |
T |
|
| Q |
407 |
ttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaagtgaaaagtggtaaattttcgtggtgtttcatgttgatct |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14145636 |
ttttgttttcaaaaaattaaatgttaatttttgggaggtccaaaaataaaagtgaaaagtggtaaattttcgtggtgtttcatgttgatct |
14145726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 14145249 - 14145396
Alignment:
| Q |
19 |
ctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14145249 |
ctaagagggttaatattgtcgaagaataagaacaaagcattatcaataacgtatgtcttgaaccattagtgaatcaagtatggtttatttttaaactcaa |
14145348 |
T |
|
| Q |
119 |
tcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14145349 |
tcaatatctataaaaggcaagattgtgcaagaagaatttgtttaaaaa |
14145396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University