View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_high_12 (Length: 352)
Name: NF9287_high_12
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 2391458 - 2391129
Alignment:
| Q |
13 |
ttattctggtattgcttgcttgctgagtcacatgttcatattannnnnnngaccaaagtaacaattttcatattaaattccacat-----gttgaaagtc |
107 |
Q |
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| T |
2391458 |
ttattctggtattgcttgcttgctgagtcacatgttcatattatttttttgaccaaagtaacaattttcatattaaattccacaatatgcgttgaaagtc |
2391359 |
T |
|
| Q |
108 |
caaaccattcaattcaaatttaacacataccataaatcctttgccgcttagt-attgatcacatattttctttgtctaagtattaagtttatgatacctt |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2391358 |
caaaccattcaattcaaatttaacgcataccataaatcctttgccgcttagttattgatcacatattttctttgtctaagtattaagtttatgatatctt |
2391259 |
T |
|
| Q |
207 |
cattatcatgtgactttttcttcaaaatccgtccacattaaaattaaaaagacatgcttacctcaaatacaaaaaatcgacaagacaccattttatcctc |
306 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391258 |
cattattatgtgactgtttcttcaaaatccgtccacattaaaattaaaaagacatgcttacctcaaatacaaaaaatcgacaagacaccattttatcctc |
2391159 |
T |
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| Q |
307 |
aatattttgttcttgactcttgagttgtaa |
336 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2391158 |
aatattttgttcttgactcttgagttgtaa |
2391129 |
T |
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