View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_high_24 (Length: 229)
Name: NF9287_high_24
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 29790005 - 29790227
Alignment:
| Q |
7 |
aacatagagtagttaagaagagcgtaactaaattcatcaaatcttgagtagcatgaagatcactccaaaggatcccacagaaaaaagttggagataattt |
106 |
Q |
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| T |
29790005 |
aacatagagtagttaagaagagcgtaactaaattcatcaaatcttgagtagcatgaagatcactccaaaggatcccacagaaaaaagttggagataattt |
29790104 |
T |
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| Q |
107 |
agagtttaagtttgtggtttacttaacgcaatgatctttcacgttatagcattattcattcacgagataatgccaaaaactaattgttttttctagtgaa |
206 |
Q |
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| T |
29790105 |
agagtttaagtttgtggtttacttaacgcaatgatctttcacgttatagcattattcattcacgagataatgccaaaaactaattgttttttctagtgaa |
29790204 |
T |
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| Q |
207 |
tcacgggaaagtttagtagatat |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
29790205 |
tcacgggaaagtttagtagatat |
29790227 |
T |
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