View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_high_9 (Length: 396)
Name: NF9287_high_9
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 387
Target Start/End: Complemental strand, 1446175 - 1445800
Alignment:
| Q |
12 |
cacaactcacatagaataaaccagaaacctttaacagcattagaacacattcaataaatccattggcttccaataccattctaggccaacacttttatct |
111 |
Q |
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| T |
1446175 |
cacaactcacatagaataaaccagaaacctttaacagcattagaacacattcaataaatccattggcttccaataccattctatgccaacacttttatct |
1446076 |
T |
|
| Q |
112 |
catatataggggtgcgaaaccgaattgnnnnnnnnnnnnnncgtacattgagtatctaaataggcgtatgaattgtctaccaacacaggcgatccaagtt |
211 |
Q |
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|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1446075 |
catacataggggtgcgaaaccgaattgcaaaaaaacaaaaacgtatattgagtatctaaataggcgtatgaattgtctaccaacacagacgatccaagtt |
1445976 |
T |
|
| Q |
212 |
cgaacaattcccttctaggtgaagaaaactaaatgccctttcaggccaaaccaaccaattacgaactgaaacacgacatcacataggtcttgaatcacag |
311 |
Q |
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| T |
1445975 |
cgaacaattcccttctaggtgaagaaaactaaatgccctttcatgccaaactaaccaattacgaactgaaacacggcatcacataggtcttgaatcacag |
1445876 |
T |
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| Q |
312 |
tccacgaacggcacgtgaagcaaccacagcagaaaaagtctttaaggtacaattatcgactactacagtcaacacg |
387 |
Q |
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| T |
1445875 |
tccacgaacggcacgtgaagcaaccacagcagaaaaagtctttaaggtacgattatcgactactacagtcaacacg |
1445800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 26062886 - 26063000
Alignment:
| Q |
165 |
atctaaataggcgtatgaattgtctaccaacacagg--cgatccaagttcgaacaattcccttctaggtgaagaaaactaaatgccctttcaggccaaac |
262 |
Q |
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| T |
26062886 |
atctacataagcgtatgaatcgtctgccaacacataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgtcctctcaagccaaac |
26062985 |
T |
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| Q |
263 |
caaccaattacgaac |
277 |
Q |
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|||| |||||||||| |
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| T |
26062986 |
caactaattacgaac |
26063000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 26068625 - 26068739
Alignment:
| Q |
165 |
atctaaataggcgtatgaattgtctaccaacacagg--cgatccaagttcgaacaattcccttctaggtgaagaaaactaaatgccctttcaggccaaac |
262 |
Q |
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||||| ||| |||||||||| |||| |||||||| |||||||||||| ||||| |||||||||| ||||| || |||| | ||| ||| ||||||| |
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| T |
26068625 |
atctacataagcgtatgaatcgtctgccaacacataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgtcctctcaagccaaac |
26068724 |
T |
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| Q |
263 |
caaccaattacgaac |
277 |
Q |
| |
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|||| |||||||||| |
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| T |
26068725 |
caactaattacgaac |
26068739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 26107442 - 26107480
Alignment:
| Q |
246 |
gccctttcaggccaaaccaaccaattacgaactgaaaca |
284 |
Q |
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||||||||||||||||||||||| |||||||| |||||| |
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| T |
26107442 |
gccctttcaggccaaaccaaccatttacgaaccgaaaca |
26107480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 26107553 - 26107590
Alignment:
| Q |
247 |
ccctttcaggccaaaccaaccaattacgaactgaaaca |
284 |
Q |
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|||||||||||||||||||||| |||||||| |||||| |
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| T |
26107553 |
ccctttcaggccaaaccaaccatttacgaaccgaaaca |
26107590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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