View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_11 (Length: 498)
Name: NF9287_low_11
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 18315344 - 18315634
Alignment:
| Q |
18 |
atatctatccaatttcacattcttaaaataactaaaatgtgaaagataaaagtgtgtaacttttccctgccagttggcacatgaaagtggtcctaaatat |
117 |
Q |
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| T |
18315344 |
atatctatccaatttcacattcttaaaataactaaaatgtgaaagataaaagtgtgtaacttttcccttccagttggcacatgaaagtggtcctaaatat |
18315443 |
T |
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| Q |
118 |
tggagtgcacaagggaccaaaatgtcacatgggttatttgtttgaattctcttaatttgcacaaagtggcaaaataaatattgaatattgcagatcatgc |
217 |
Q |
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| T |
18315444 |
tgtaatgcacaagggaccaaaatgtcacatgggttatttgtttgaattctcttaatttgcacaaagtggcaaaataaatattgaatattgcagatcatgc |
18315543 |
T |
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| Q |
218 |
gta-atagacatggaggtcccattttcagtgtaaaaagtaaggtagctagctactgttaacgtatatatatgttgtttccatgtgcatggt |
307 |
Q |
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| T |
18315544 |
gtatatagacatggaggtcccattttcagtgtaaaaagtaaggtagctagctactgttaacgtatatatatgttgtttccatgtgcatggt |
18315634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 307 - 486
Target Start/End: Original strand, 18315664 - 18315843
Alignment:
| Q |
307 |
tttaatatactgtgttcagtctaatcaatttcactgcacattcctcctgattgtagatacacattttatttactgcaccctatatatgttcagacaaatt |
406 |
Q |
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| T |
18315664 |
tttaatatactgtgttcagtctaatcaatttcactgcacattcctcctgattgtagatacacattttatttactgcaccctatatatgttcagacaaatt |
18315763 |
T |
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| Q |
407 |
ttgcaaatcaaattgttttgaatattctgtggaaaatnnnnnnncacattgaacttttgtggctatattgtagaattatc |
486 |
Q |
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| T |
18315764 |
ttgcaaatcaaattgttttgaatattctgtggaaaataaaaaaacacattgaacttttgtggctatattgtagaattatc |
18315843 |
T |
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