View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_14 (Length: 478)
Name: NF9287_low_14
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Original strand, 31607405 - 31607853
Alignment:
| Q |
15 |
tggtgttgcacaaaagatcgtcattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttc |
114 |
Q |
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| T |
31607405 |
tggtgttgcacaaaaaatcaccattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttc |
31607504 |
T |
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| Q |
115 |
tggtgtgtttgccaaacctaaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatc |
214 |
Q |
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| T |
31607505 |
tggtgtgtttgccaaacctaaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatc |
31607604 |
T |
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| Q |
215 |
aagcaaatgtggtaccaattattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatc |
314 |
Q |
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| T |
31607605 |
aagcaaatgtggtaccaattattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatc |
31607704 |
T |
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| Q |
315 |
ttcgaatgcaagaagaagagcttgaggttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggagaaagaatgaggctccctct |
414 |
Q |
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| T |
31607705 |
ttcgaatgcaagaagaagaccttgaggttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggagaaagaatgcggctccctct |
31607804 |
T |
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| Q |
415 |
tcgtcgagatataagtccaataattccttacatttctcaccaaagacat |
463 |
Q |
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| T |
31607805 |
tcgtcgagatataagtccaataattccttacatttctcaccaaagacat |
31607853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 39724577 - 39724523
Alignment:
| Q |
342 |
ttggtgatgatgctgctcatggggaagaagcttatgtattatggggtgatggaga |
396 |
Q |
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|||| |||||||| | |||||||||||||||||||| ||||||||||||||||| |
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| T |
39724577 |
ttggggatgatgcagttcatggggaagaagcttatgctttatggggtgatggaga |
39724523 |
T |
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