View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_2 (Length: 991)
Name: NF9287_low_2
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 794; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 145 - 990
Target Start/End: Original strand, 8264117 - 8264962
Alignment:
| Q |
145 |
caaaaataaattcttatcaagcacgctcttttcatagtactataatataagttaccccatccgatttatcctttggaggtttctcaactctgacaacctc |
244 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8264117 |
caaaaataaattcttatcaagcacgctcttttcatagtactgtaatataagttaccccatccgatttatccttcggaggtttctcaactctgacaacctc |
8264216 |
T |
|
| Q |
245 |
caagaacagttgcaaccactactccaccacctcttctcaaaaacatgattcaacctcgacaaccataactaaagtaatccttcttcaatcgagcaatgag |
344 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264217 |
caagaacagttgcaactactactccaccacctcttctcaaaaacatgattcaacctcgacaaccataactaaagtaatccttcttcaatcgagcaatgag |
8264316 |
T |
|
| Q |
345 |
caatatcgcacatttcaccatcactgacttgccctcaccctatttgaaaggttactagattacaatcgaaatctctgaggacatatacatcaaagggagt |
444 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264317 |
caatatcgcaaatttcaccatcactgacttaccctcaccctatttgaaaggttactagattacaatcgaaatctctgaggacatatacatcaaagggagt |
8264416 |
T |
|
| Q |
445 |
cgaaggattcataaagaacctgcatgggaggttgattttgaagataggagataaatcacccacttcaaaatatctaatagaaaccctattcatatttgga |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8264417 |
cgaaggattcataaagaacctgcatgggaggttgattttgaagataggagataaatcacccacttcaaaatatctaatagaaaccctattcatatttgga |
8264516 |
T |
|
| Q |
545 |
aatccatcacaaattgacaatttattccgtcttggcaacaatttattcgaatttattttctcaattcttgaggaaatgtgctccgtttgatcggtgagtt |
644 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8264517 |
aatccatcacaaattgacaacttattccgtgttggcaacaatttattcgaatttattttctcaattcttgaggaaatgtgctccatttgatcggtgagtt |
8264616 |
T |
|
| Q |
645 |
cttggaatctcaaatttgaaatcctttgtatgtgggagaagtgctaggagctaacgctctaacaaacacggatgaacacatgcttctaaattaagccaag |
744 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8264617 |
cttggaatctcaaatttggaatcctttgtatgtgggagaagtgctaggagctaacgctctaacaaacgcggatgaacacatgcttctaaattaagccaag |
8264716 |
T |
|
| Q |
745 |
ttactctttttaaaatgatggttaccggcacaccaggtttgtgtcattttataaagtaatgattaattttcatatctcaaaggccctcatctctcgcatt |
844 |
Q |
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| T |
8264717 |
ttactctttttaaaatgctggttaccggcacaccaggtttgtgtcattttataaagtaatgattaattttcatatctcaaaggccctcatctctcgcatt |
8264816 |
T |
|
| Q |
845 |
caacatatgaagcatcaaaactccattaaaacaaaatcaaacaccaaacctttcattagccacacaaaattcatctctcaaacaaacagtcacaagactt |
944 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
8264817 |
caacatatgaagcatcaaaactccattaaaacaaaatcaaacaccaaacctttcattagccacacaaaattcatctctcaaacaaatagtcataagactt |
8264916 |
T |
|
| Q |
945 |
gcgtcaacttcctctcttttctgccactaacttctaacaccaaact |
990 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8264917 |
gcgtcaacttcctctcttttctgccactaacttctaacaccaaact |
8264962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 8262666 - 8262743
Alignment:
| Q |
76 |
tgaacctttatgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagccacttacaaaaataa |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8262666 |
tgaacctttatgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagtcacttacaaaaataa |
8262743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 8271976 - 8272039
Alignment:
| Q |
86 |
tgttccaatgattcggaatatgtgttttgggacagttttcaccccactgaagccacttacaaaa |
149 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
8271976 |
tgttccaatgattcagaatatgtgttttgggacagttttcaccccacagaagccatgtacaaaa |
8272039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 8245823 - 8245869
Alignment:
| Q |
90 |
ccaatgattcggaatatgtgttttgggacagttttcaccccactgaa |
136 |
Q |
| |
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|||| |||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
8245823 |
ccaacgatttggattatgtgttttgggacagttttcaccctactgaa |
8245869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 873 - 990
Target Start/End: Original strand, 38789218 - 38789334
Alignment:
| Q |
873 |
aaacaaaatcaaacaccaaacctttcattagccacacaaaattcatctctcaaacaaacagtcacaagacttgcgtcaacttcctctcttttctgccact |
972 |
Q |
| |
|
||||||| |||| |||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
38789218 |
aaacaaagtcaagcaccggacctttcattagcaacgcaaaactcatctctcaaacaaacagtcacaagacttacgtcgacttcctctcttttctgccact |
38789317 |
T |
|
| Q |
973 |
aacttctaacaccaaact |
990 |
Q |
| |
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|| |||||||| |||||| |
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| T |
38789318 |
aa-ttctaacagcaaact |
38789334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 759
Target Start/End: Original strand, 38789063 - 38789138
Alignment:
| Q |
684 |
agtgctaggagctaacgctctaacaaacacggatgaacacatgcttctaaattaagccaagttactctttttaaaa |
759 |
Q |
| |
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||||||||| || || |||||||||||| | ||||||| || |||||||||||||||| |||||||||| |||| |
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| T |
38789063 |
agtgctaggcgcaaatgctctaacaaactcagatgaacgcacacttctaaattaagccacattactcttttcaaaa |
38789138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 16574854 - 16574730
Alignment:
| Q |
389 |
tgaaaggttactagattacaatcgaaatctctgaggacatatacatcaaagggagtcgaaggattcataaagaacctgcatgggaggttgattttgaaga |
488 |
Q |
| |
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|||||||| |||| ||| ||||| ||||||||||||| ||||| ||| |||| | |||| || || | | | ||| ||||||||||||||||| |||| |
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| T |
16574854 |
tgaaaggtgactaaatttcaatcaaaatctctgaggatgaatacaccaa-gggaattgaagaatgcaaagatatcctccatgggaggttgatttttaaga |
16574756 |
T |
|
| Q |
489 |
taggagataaatcacccacttcaaaa |
514 |
Q |
| |
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|||||||||||| |||||| ||||| |
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|
| T |
16574755 |
aaggagataaatctcccactgcaaaa |
16574730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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