View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_20 (Length: 407)
Name: NF9287_low_20
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 41100602 - 41100976
Alignment:
| Q |
14 |
attattctaaatgactaaaaaggagaatatgagacaaataatattaagttaaattataattttgagtatgtataagtataaccatcgttgagctaacata |
113 |
Q |
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| T |
41100602 |
attattctaaatgactaaaaaggagaatatgagacaaataatattaagttaaattataattttgagtatgtataagtataaccatcgttgagctaacata |
41100701 |
T |
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| Q |
114 |
tcaagaaggatcagtacagttgataacaaattattatattattatgaaactgcaaactggaattgaaacaaagaaaactaattacctatgagccatatat |
213 |
Q |
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| T |
41100702 |
tcaagaaggatcagtacagttgataacaaattattatattattatgaaactgcaaactggaattgaaacaaagaaaactaattacctatgagccatatat |
41100801 |
T |
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| Q |
214 |
ttgagaagttcatcggttccaaaccccctaacagcaatgtcttccagatgactgcaacttaggtcaatgaaatctcttcaacaacnnnnnnnnnnnnnnn |
313 |
Q |
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| T |
41100802 |
ttgagaagttcatcggttccaaaccccctaacagcaatgtcttccagatgactgcaacttaggtcaatgaaatctcttcaacaacaaaagaaaaatgaaa |
41100901 |
T |
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| Q |
314 |
nngtaaacttgctttcatatcaattggcatttgaaaccaaactaagtccgactaacaatctcttcatatcaacat |
388 |
Q |
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| T |
41100902 |
aagtaaacttgctttcatatcaattggcatttgaaaccaaactaagtccgactaactatctcttcatatcaacat |
41100976 |
T |
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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 282
Target Start/End: Original strand, 29746632 - 29746888
Alignment:
| Q |
32 |
aaaggagaatatgagacaaataatattaagttaaattataattttgagtatgtataagtataaccatcgttgagctaa----catatcaagaaggatcag |
127 |
Q |
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| T |
29746632 |
aaaggagaatatgggacggaaaatattaaattaaattataatttagaatatgtataagtataatcatggttaagcaagatggcatagcaagaaggatcaa |
29746731 |
T |
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| Q |
128 |
tacagttgataacaaattattatattattatgaaactgcaaactggaattgaaacaaagaaaac---------taattacctatgagccatatatttgag |
218 |
Q |
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| T |
29746732 |
tgctgttgataacaaaatatagtattattatgaaactg-------gaattgaaacaaacaaaatgcaactaattaattacctatgagccaaatattcaag |
29746824 |
T |
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| Q |
219 |
aagttcatcggttccaaaccccctaacagcaatgtcttccagatgactgcaacttaggtcaatg |
282 |
Q |
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| T |
29746825 |
aagttcatcagttgcaaaccagctaatagtaatgtcttccagattactgctacttaggtcaatg |
29746888 |
T |
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