View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9287_low_23 (Length: 389)

Name: NF9287_low_23
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9287_low_23
NF9287_low_23
[»] chr6 (11 HSPs)
chr6 (14-373)||(28327434-28327795)
chr6 (14-373)||(28505070-28505431)
chr6 (132-373)||(28295774-28296015)
chr6 (132-373)||(28516058-28516299)
chr6 (123-373)||(28236412-28236662)
chr6 (132-373)||(28187304-28187544)
chr6 (187-373)||(28244784-28244970)
chr6 (14-121)||(28524324-28524431)
chr6 (14-99)||(28190504-28190589)
chr6 (12-112)||(28238477-28238577)
chr6 (14-121)||(28245446-28245553)
[»] scaffold0019 (1 HSPs)
scaffold0019 (14-373)||(56227-56578)
[»] scaffold0038 (4 HSPs)
scaffold0038 (123-373)||(36574-36824)
scaffold0038 (187-373)||(44946-45132)
scaffold0038 (12-112)||(38639-38739)
scaffold0038 (14-121)||(45608-45715)
[»] chr5 (2 HSPs)
chr5 (252-365)||(16693016-16693129)
chr5 (32-75)||(16693294-16693337)
[»] chr2 (1 HSPs)
chr2 (329-373)||(3281588-3281632)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 28327795 - 28327434
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28327795 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataagacaaaagaaaaataattaacgaatgaatgaata 28327696  T
Q  114 ttcttataagacgagggtaaaaaatcattacatttacacatataccttcattgtgccacag--ctcatatgatgaaaagtcactttcctgtagcttgcat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  28327695 ttcttataagacgagggtaaaaaatcattacatttacacatataccttcattgtgccacacaactcatatgatgaaaagtcactttcctgtagcttgcat 28327596  T
Q  212 acagaaagtttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctt 311  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28327595 acagaacgtttctttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctt 28327496  T
Q  312 tggaaaagctaccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28327495 tggaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatct 28327434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 28505431 - 28505070
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28505431 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataagacaaaagaaaaataattaacgaatgaatgaata 28505332  T
Q  114 ttcttataagacgagggtaaaaaatcattacatttacacatataccttcattgtgccacag--ctcatatgatgaaaagtcactttcctgtagcttgcat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  28505331 ttcttataagacgagggtaaaaaatcattacatttacacatataccttcattgtgccacacaactcatatgatgaaaagtcactttcctgtagcttgcat 28505232  T
Q  212 acagaaagtttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctt 311  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28505231 acagaacgtttctttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctt 28505132  T
Q  312 tggaaaagctaccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28505131 tggaaaagctaccattcttaacaataagtgttttaaggttttgcatcttcttgagttcatct 28505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 132 - 373
Target Start/End: Original strand, 28295774 - 28296015
Alignment:
Q  132 aaaaaatcattacatttacacatataccttcattgtgcca--cagctcatatgatgaaaagtcactttcctgtagcttgcatacagaaagtttgtttggg 229  Q
    ||||||||||||||||||||||||  ||||||||||||||  || | || ||||   ||||||||||| |||||||||||||| ||||||||| ||||||    
T  28295774 aaaaaatcattacatttacacata--ccttcattgtgccatgcaacccaaatgaaataaagtcactttgctgtagcttgcatatagaaagtttctttggg 28295871  T
Q  230 aaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattct 329  Q
     ||| |||||| |||| || |||||||||||||||| |||||||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||    
T  28295872 caaaaatcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattct 28295971  T
Q  330 taacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||    
T  28295972 taacaataagtgttttgaggttttgcatcttcttgagctcatct 28296015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 132 - 373
Target Start/End: Complemental strand, 28516299 - 28516058
Alignment:
Q  132 aaaaaatcattacatttacacatataccttcattgtgcca--cagctcatatgatgaaaagtcactttcctgtagcttgcatacagaaagtttgtttggg 229  Q
    ||||||||||||||||||||||||  ||||||||||||||  || | || ||||   ||||||||||| |||||||||||||| ||||||||| ||||||    
T  28516299 aaaaaatcattacatttacacata--ccttcattgtgccatgcaacccaaatgaaataaagtcactttgctgtagcttgcatatagaaagtttctttggg 28516202  T
Q  230 aaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattct 329  Q
     ||| |||||| |||| || |||||||||||||||| |||||||||||||||| | ||| | ||||| ||||||||||||||||||||||||||||||||    
T  28516201 caaaaatcagatggtatgatccgtgaaggatatttaggccattccaatactctcaaactgttaggaagatatttaggacctttggaaaagctaccattct 28516102  T
Q  330 taacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||    
T  28516101 taacaataagtgttttgaggttttgcatcttcttgagctcatct 28516058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 123 - 373
Target Start/End: Complemental strand, 28236662 - 28236412
Alignment:
Q  123 gacgagggtaaaaaatcattacatttacacatataccttcattgtgccac--agctcatatgatgaaaagtcactttcctgtagcttgcatacagaaagt 220  Q
    |||||||| ||||||||||||||||||||||||  |||||| ||||||||  | |||| ||||||||| ||||||||||| ||| |||||||  ||||||    
T  28236662 gacgagggaaaaaaatcattacatttacacata--ccttcactgtgccacgcaactcaaatgatgaaaggtcactttcctttagtttgcatattgaaagt 28236565  T
Q  221 ttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagc 320  Q
    || |||||| | | |||||| |||| || || ||||||||||||| |||||||||||||||| | ||||| ||||| ||| ||||||||||||||||||     
T  28236564 ttctttgggcagaaatcagatggtatgatccttgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaagg 28236465  T
Q  321 taccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  28236464 taccattcttaacaataagtgttttgaggttttgcatcttcttgagttcatct 28236412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 132 - 373
Target Start/End: Complemental strand, 28187544 - 28187304
Alignment:
Q  132 aaaaaatcattacatttacacatataccttcattgtgccac--agctcatatgatgaaaagtcactttcctgtagcttgcatacagaaagtttgtttggg 229  Q
    ||||||||||||||||||||||||  |||||||||||||||  | |||| |||||| ||||||||||| |||||| ||||||| ||||||||| ||||||    
T  28187544 aaaaaatcattacatttacacata--ccttcattgtgccacgcaactcaaatgatgtaaagtcactttgctgtagtttgcatatagaaagtttctttggg 28187447  T
Q  230 aaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattct 329  Q
    |||| |||||| |||| || ||||||||||||||| ||||||||||||||||| | ||| |  |||| |||||| ||||| ||||||||| |||||||||    
T  28187446 aaaa-atcagatggtatgacccgtgaaggatatttttgccattccaatactctcaaactgtttggaagatattttggaccattggaaaaggtaccattct 28187348  T
Q  330 taacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    ||||||||||| |||| || |||||||||||||  |||||||||    
T  28187347 taacaataagtgttttgagcttttgcatcttctccagttcatct 28187304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 187 - 373
Target Start/End: Complemental strand, 28244970 - 28244784
Alignment:
Q  187 aaagtcactttcctgtagcttgcatacagaaagtttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaata 286  Q
    |||||||||||  ||||||||||||| ||||||||| |||||| ||| |||||| |||| || | |||||||||||||| |||||||||||||||| | |    
T  28244970 aaagtcactttgttgtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgaccggtgaaggatatttaggccattccaatactctcaga 28244871  T
Q  287 ctatcaggaaaatatttaggacctttggaaaagctaccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    || |  |||| |||||| ||||| ||||||||| |||||||||||||||||||| |||| ||||||| ||||||||| |||||||||    
T  28244870 ctgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcatct 28244784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 28524431 - 28524324
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  28524431 cgtgttaaaaattgacaattgtctagatttaactctttcatattcacaaacctctgcaaaatatacggcaaaagaaaaagaattaatgaatgaatgaata 28524332  T
Q  114 ttcttata 121  Q
    ||||||||    
T  28524331 ttcttata 28524324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 28190589 - 28190504
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaa 99  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||    
T  28190589 cgtgttaaaaattgacaattgtctagatttaactctctcatattcacaaacctctgcaaaatatcaggccaaagaaaaggaattaa 28190504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 28238577 - 28238477
Alignment:
Q  12 ttcgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaa 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||  |||||| |||    
T  28238577 ttcgtgttaaatactgacatttgtctagatttaactctctcatattcacaaagccctgcaaaatataaggcaaaagaaaaataattaattaatgaacgaa 28238478  T
Q  112 t 112  Q
    |    
T  28238477 t 28238477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 28245553 - 28245446
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||| ||||||| | |||||||||||||||||| | |||| ||||| ||||||||||||| |||||| ||||||||||||| ||||||||||  |    
T  28245553 cgtgttaaatattgacagtcgtctagatttaactctcttacattcccaaacctctgcaaaatatacggcaaatgaaaaagaattaatgaatgaatgagaa 28245454  T
Q  114 ttcttata 121  Q
    ||||||||    
T  28245453 ttcttata 28245446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 161; Significance: 9e-86; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 56227 - 56578
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |  | ||       
T  56227 cgtgttaaatattgacatttgtctagatttaactctctcatattcacaaacctctgcaaaatataaggcaaaagaaaaataattaatgattataaga--- 56323  T
Q  114 ttcttataagacgagggtaaa-aaatcattacatttacacatataccttcattgtgccac--agctcatatgatgaaaagtcactttcctgtagcttgca 210  Q
          ||||| ||| | ||  |||||||| |||||| |||||  |||| ||||| ||||  | |||  |||||| ||||||||||| |||||| |||||    
T  56324 ------taagatgagagaaatgaaatcattgcatttaaacata--ccttgattgtcccacgcaactcgaatgatgtaaagtcactttgctgtagtttgca 56415  T
Q  211 tacagaaagtttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacct 310  Q
    || ||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| | ||| | ||||| || ||||||||||    
T  56416 tatagaaagtttcttcgggaaaatatcagatggtacgaaccgtgaaggatatttacgccattccaatactctcaaactgttaggaagatgtttaggacct 56515  T
Q  311 ttggaaaagctaccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  56516 ttggaaaagctaccattcttaacaataagtgttttgaggttttgcatcttcttgagttcatct 56578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 123 - 373
Target Start/End: Complemental strand, 36824 - 36574
Alignment:
Q  123 gacgagggtaaaaaatcattacatttacacatataccttcattgtgccac--agctcatatgatgaaaagtcactttcctgtagcttgcatacagaaagt 220  Q
    |||||||| ||||||||||||||||||||||||  |||||| ||||||||  | |||| ||||||||| ||||||||||| ||| |||||||  ||||||    
T  36824 gacgagggaaaaaaatcattacatttacacata--ccttcactgtgccacgcaactcaaatgatgaaaggtcactttcctttagtttgcatattgaaagt 36727  T
Q  221 ttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagc 320  Q
    || |||||| | | |||||| |||| || || ||||||||||||| |||||||||||||||| | ||||| ||||| ||| ||||||||||||||||||     
T  36726 ttctttgggcagaaatcagatggtatgatccttgaaggatatttaggccattccaatactctcaaactattaggaagataattaggacctttggaaaagg 36627  T
Q  321 taccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  36626 taccattcttaacaataagtgttttgaggttttgcatcttcttgagttcatct 36574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 187 - 373
Target Start/End: Complemental strand, 45132 - 44946
Alignment:
Q  187 aaagtcactttcctgtagcttgcatacagaaagtttgtttgggaaaatatcagacggtacgaaccgtgaaggatatttatgccattccaatactctaata 286  Q
    |||||||||||  ||||||||||||| ||||||||| |||||| ||| |||||| |||| || | |||||||||||||| |||||||||||||||| | |    
T  45132 aaagtcactttgttgtagcttgcatatagaaagtttctttgggcaaaaatcagatggtatgaccggtgaaggatatttaggccattccaatactctcaga 45033  T
Q  287 ctatcaggaaaatatttaggacctttggaaaagctaccattcttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    || |  |||| |||||| ||||| ||||||||| |||||||||||||||||||| |||| ||||||| ||||||||| |||||||||    
T  45032 ctgtttggaagatattttggaccattggaaaaggtaccattcttaacaataagtgttttgaggttttccatcttcttcagttcatct 44946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 38739 - 38639
Alignment:
Q  12 ttcgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaa 111  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||  |||||| |||    
T  38739 ttcgtgttaaatactgacatttgtctagatttaactctctcatattcacaaagccctgcaaaatataaggcaaaagaaaaataattaattaatgaacgaa 38640  T
Q  112 t 112  Q
    |    
T  38639 t 38639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 45715 - 45608
Alignment:
Q  14 cgtgttaaaaattgacatttgtctagatttaactctctcatattcacaaacatctgcaaaatataaggcaaaagaaaaagaattaacgaatgaatgaata 113  Q
    ||||||||| ||||||| | |||||||||||||||||| | |||| ||||| ||||||||||||| |||||| ||||||||||||| ||||||||||  |    
T  45715 cgtgttaaatattgacagtcgtctagatttaactctcttacattcccaaacctctgcaaaatatacggcaaatgaaaaagaattaatgaatgaatgagaa 45616  T
Q  114 ttcttata 121  Q
    ||||||||    
T  45615 ttcttata 45608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 16693129 - 16693016
Alignment:
Q  252 gtgaaggatatttatgccattccaatactctaatactatcaggaaaatatttaggacctttggaaaagctaccattcttaacaataagtattttaaggtt 351  Q
    ||||||||||| |||||||||| |  ||||| | |||||  |||| || ||| || ||||||||||||  ||||||||||| ||||||| |||| |||||    
T  16693129 gtgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaagtgaccattcttaataataagtgttttgaggtt 16693030  T
Q  352 ttgcatcttcttga 365  Q
    |  |||||||||||    
T  16693029 tatcatcttcttga 16693016  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 16693337 - 16693294
Alignment:
Q  32 ttgtctagatttaactctctcatattcacaaacatctgcaaaat 75  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  16693337 ttgtctaaatttaactctctcatattcacgaacttctgcaaaat 16693294  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 3281632 - 3281588
Alignment:
Q  329 ttaacaataagtattttaaggttttgcatcttcttgagttcatct 373  Q
    |||||||||||| |||| ||||||| ||||||||||| |||||||    
T  3281632 ttaacaataagtgttttgaggtttttcatcttcttgaattcatct 3281588  T

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