View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_26 (Length: 384)
Name: NF9287_low_26
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 2425994 - 2425623
Alignment:
| Q |
1 |
tacaacttaagagtggtttgat--acgttaactaattttacataaacgaatttgtatttttaagagtgcgatgcccttaaactctaaaaggttaacctat |
98 |
Q |
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| T |
2425994 |
tacaacttaagagtggtttgatcaacgttaactaattttacataaacgaatttgtatttt-aagagtgcgatgcccttaaactctaaaaggtttacctat |
2425896 |
T |
|
| Q |
99 |
aataaagtatcaaataaaggttgtgttactaacatatttctcataacatagaatattattttccttcaaagatctgacctgaccgggacaatccttttga |
198 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2425895 |
aataaagtatcaaataaaggttgtgttattaacat--ttctcataacatacaatattattttccttcaaagatctcacctgaccgggacaatccttttga |
2425798 |
T |
|
| Q |
199 |
ttagggcaataattttggtcaatcacaataggattttgaacattaaccatggtagcatgttgaaaaatgatgtttcttgcgaagccattgctaggtctcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425797 |
ttagggcaataattttggtcaatcacaataggattttgaacattaaccatggtagcatgttgaaaaatgatgtttcttgcgaagccattgctaggtctcc |
2425698 |
T |
|
| Q |
299 |
cccaagacttaattcttacaccattttctgttccaataaattttattgttttaactgtcacgttttcaacaccaa |
373 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425697 |
cccaagacttgattcttacaccattttctgttccaataaattttattgttttaactgtcacgttttcaacaccaa |
2425623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 364
Target Start/End: Original strand, 32522613 - 32522775
Alignment:
| Q |
202 |
gggcaataattttggtcaatcacaataggattttgaacattaaccatggtagcatgttgaaaaatgatgtttcttgcgaagccattgctaggtctccccc |
301 |
Q |
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||||||||||| |||||||| ||||| || ||||| |||||||||||| | |||| ||| |||| |||||| || | || |||||||||||||| |||| |
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| T |
32522613 |
gggcaataattctggtcaattacaattgggttttggacattaaccatgattgcatcttggaaaaagatgttcctcacaaatccattgctaggtctacccc |
32522712 |
T |
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| Q |
302 |
aagacttaattcttacaccattttctgttccaataaattttattgttttaactgtcacgtttt |
364 |
Q |
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|||| || ||||| |||||||||| ||||| | ||| | | ||||||||||||||| |||| |
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| T |
32522713 |
aagattttattctaacaccattttgagttcctgtgaatgtaactgttttaactgtcacatttt |
32522775 |
T |
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