View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_3 (Length: 970)
Name: NF9287_low_3
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 922; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 15 - 948
Target Start/End: Complemental strand, 33231236 - 33230303
Alignment:
| Q |
15 |
cagagaggtatgtctagaacttgaagacgatatatgtttcggtggtggtatccaattgtggataaaaagagttcaatccgattttcttcacttcagctac |
114 |
Q |
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| T |
33231236 |
cagagaggtatgtctagaacttgaagacgatatatgtttcggtggtggtatccaattgtggataaaaagagttcaatccgattttcttcacttcagctac |
33231137 |
T |
|
| Q |
115 |
aacagcgaccaaagatttcaagttgttacaaccttcaaattcaaagagacctttgattcccatggttgtattatgacttgggttttttgttatggtaggg |
214 |
Q |
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| T |
33231136 |
aacagcgaccaaagatttcaagttattacaaccttcaaattcaaagagacctttaattcccatggttgtattatgacttgggttttttgttatggtaggg |
33231037 |
T |
|
| Q |
215 |
caggcaaagggggccttattgttgtggaggggaagaaaagaagtaaagaggataaatacctctatacaacaactgtgacacactattatgctattagtca |
314 |
Q |
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| T |
33231036 |
caggcaaagggggccttattgttgtggaggggaagaaaagaagtaaagaggataaatacctctatacaacaactgtgacacactattatgctattagtca |
33230937 |
T |
|
| Q |
315 |
aggaaatatgttcactcaaaataaaatagatatcggtctttctatggttgttaattttaatgtatctaatggaagtataaattgtacagttaaaggtcct |
414 |
Q |
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| T |
33230936 |
aggaaatatgttcactcaaaataaaatagatatcggtctttcaatggttgttaattttaatgtatctaatggaagtataaattgtacagttaaaggtcct |
33230837 |
T |
|
| Q |
415 |
gatcaacacccttctgccgcattattttacatgtttgaacaagtttgtagaagtgggaattggaagctcactgcatgctttcactgtgcgatcgcagatc |
514 |
Q |
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| T |
33230836 |
gatcaacacccttctgccgcattattttacatgtttgaacaagtttgtagaagtgggaattggaagctcactgcatgctttcactgtgcgatcgcagatc |
33230737 |
T |
|
| Q |
515 |
aaggacagtcaagcgagatcaagcataaagatgacatacacaaaaatattttaccaacaaacatggatggcttgcgctcctcaaacaccaaaaacgcaaa |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33230736 |
aaggacagtcaagcgagatcaagcataaagatgacatacacaaaaatattttaccaacaaacatggatggcttgcgctcctcaaacaccaaaaacgcaaa |
33230637 |
T |
|
| Q |
615 |
atcatgcaaattaacacaattagtgcaatatgtaaccactcgcaagggaaattcaacaaatcaatctcaatcatccgcttttaaacaacaatcaagagca |
714 |
Q |
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| T |
33230636 |
atcatgcaaattaacacaattagtgcaatatgtaaccactcgcaagggaaattcaacaaatcaatctcaatcatccgcttttaaacaacaatcaagagca |
33230537 |
T |
|
| Q |
715 |
caatcacatatgaccgtaagatatccgaatattccacccatagtgccgaatcatggtcttcgggaaaataagagattagagttgattgacaataaagaca |
814 |
Q |
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| T |
33230536 |
caatcacatatgaccgtaagatatccgaatattccacccatagtgccgaatcatggtcttcgggaaaataagagattagagttgattgacaataaagaca |
33230437 |
T |
|
| Q |
815 |
tcaacggaaatgggaatggtaatagaattggaggggatcaaaagtttaaattttctattccttttaaaattgtgaataaattcctaaattagaattattg |
914 |
Q |
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| T |
33230436 |
tcaacggaaatgggaatggtaatagaattggaggggatcaaaagtttaaattttctattccttttaaaattgtgaataaattcctaaattagaattattg |
33230337 |
T |
|
| Q |
915 |
ggagacaatgcttgatgtaagtgaaccttaggat |
948 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
33230336 |
ggagacaatgcttgatgtaagtgaaccttaggat |
33230303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 769 - 943
Target Start/End: Complemental strand, 33222367 - 33222193
Alignment:
| Q |
769 |
ggtcttcgggaaaataagagattagagttgattgacaataaagacatcaacggaaatgggaatggtaatagaattggaggggatcaaaagtttaaatttt |
868 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33222367 |
ggtcctcgagaaaataagagattagagttgattgacaataaagacatcattggaaatgggaatggtaatagaattgaaggggatcaaaagtttaaatttt |
33222268 |
T |
|
| Q |
869 |
ctattccttttaaaattgtgaataaattcctaaattagaattattgggagacaatgcttgatgtaagtgaacctt |
943 |
Q |
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|||||||||||||| |||||||||| |||| ||||||| ||||| | |||||| |||||||||||||||||||| |
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| T |
33222267 |
ctattccttttaaatttgtgaataacttccgaaattagtattatccgaagacaaagcttgatgtaagtgaacctt |
33222193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 409 - 480
Target Start/End: Complemental strand, 33222714 - 33222643
Alignment:
| Q |
409 |
ggtcctgatcaacacccttctgccgcattattttacatgtttgaacaagtttgtagaagtgggaattggaag |
480 |
Q |
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| T |
33222714 |
ggtcctgatcaacacccttcttcagcattgttttatatgtttgaacaagtctatagaagcgggaactggaag |
33222643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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