View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_32 (Length: 323)
Name: NF9287_low_32
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 41414041 - 41414207
Alignment:
| Q |
10 |
agaacctgtgtttttatggtagcaattagagatacaaagattgttaaaggcaataaatgtttctgaattattgttgtttatcatacatcacgtcaatatt |
109 |
Q |
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| T |
41414041 |
agaacctgtgtttttatggtagcaattagagatacaaagattgttaaaggcaataaatgtttctgaattattgttgtttttcatacatcacgtcaatatt |
41414140 |
T |
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| Q |
110 |
aagaaatcttggttttattttcccttgtgttggcaattggcatcacgcattatcaataaactcgacc |
176 |
Q |
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| T |
41414141 |
aagaaatcttggttttattttcccttttgttggcaattggcatcacgcattatcaataaactcgacc |
41414207 |
T |
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Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 41414238 - 41414328
Alignment:
| Q |
207 |
cattaattaaatagtgatttgatttggtttgtcattaaaaccccattgtcactagcaatttagcatgatgggtagcaggaagcaaattgta |
297 |
Q |
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| T |
41414238 |
cattaattaaatagtgatttgatttggtttgtcattaaaaccccattgtcactagcaatttagcatgatgggtagcaggaagcaaattgta |
41414328 |
T |
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