View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9287_low_40 (Length: 271)

Name: NF9287_low_40
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9287_low_40
NF9287_low_40
[»] chr1 (30 HSPs)
chr1 (19-271)||(18056807-18057055)
chr1 (19-255)||(23319877-23320111)
chr1 (19-271)||(45889619-45889869)
chr1 (114-271)||(22348062-22348217)
chr1 (114-255)||(8402196-8402337)
chr1 (114-256)||(179646-179786)
chr1 (155-253)||(30802437-30802535)
chr1 (179-268)||(37639368-37639457)
chr1 (179-271)||(16115874-16115966)
chr1 (179-268)||(35198131-35198220)
chr1 (32-83)||(8402145-8402196)
chr1 (36-83)||(179786-179833)
chr1 (229-268)||(11421621-11421660)
chr1 (229-268)||(20434722-20434761)
chr1 (32-79)||(22348221-22348268)
chr1 (229-268)||(48762331-48762370)
chr1 (234-268)||(4097913-4097947)
chr1 (233-266)||(21256776-21256809)
chr1 (229-266)||(34369689-34369726)
chr1 (229-268)||(18618862-18618901)
chr1 (229-268)||(24635953-24635992)
chr1 (229-268)||(25889028-25889067)
chr1 (229-268)||(31529665-31529704)
chr1 (229-268)||(33097432-33097471)
chr1 (229-268)||(44260545-44260584)
chr1 (229-268)||(49936937-49936976)
chr1 (229-268)||(50351830-50351869)
chr1 (234-268)||(23175527-23175561)
chr1 (234-268)||(51801738-51801772)
chr1 (229-265)||(28375494-28375530)
[»] chr8 (34 HSPs)
chr8 (19-271)||(39021998-39022248)
chr8 (19-271)||(32987240-32987487)
chr8 (43-268)||(15260667-15260890)
chr8 (114-271)||(4836588-4836743)
chr8 (114-271)||(4842033-4842188)
chr8 (114-271)||(7058137-7058292)
chr8 (128-268)||(8550530-8550670)
chr8 (155-269)||(7614093-7614207)
chr8 (114-218)||(2750101-2750205)
chr8 (179-268)||(15181817-15181906)
chr8 (202-271)||(1208732-1208801)
chr8 (32-83)||(4836537-4836588)
chr8 (32-83)||(4841982-4842033)
chr8 (127-166)||(1208829-1208868)
chr8 (32-83)||(8550682-8550733)
chr8 (25-79)||(39658372-39658426)
chr8 (32-83)||(7058292-7058343)
chr8 (233-268)||(9852297-9852332)
chr8 (233-268)||(34648132-34648167)
chr8 (25-83)||(1208877-1208935)
chr8 (229-271)||(42433724-42433766)
chr8 (229-266)||(12355451-12355488)
chr8 (233-266)||(35302590-35302623)
chr8 (229-268)||(10237381-10237420)
chr8 (229-268)||(19784298-19784337)
chr8 (233-268)||(23396504-23396539)
chr8 (229-268)||(30413941-30413980)
chr8 (229-268)||(34633321-34633360)
chr8 (229-268)||(41099209-41099248)
chr8 (229-268)||(43690667-43690706)
chr8 (234-268)||(40247290-40247324)
chr8 (234-267)||(1150028-1150061)
chr8 (235-268)||(30651976-30652009)
chr8 (32-83)||(2750205-2750254)
[»] chr5 (21 HSPs)
chr5 (19-271)||(23335496-23335749)
chr5 (19-271)||(13362793-13363050)
chr5 (19-271)||(25017026-25017259)
chr5 (133-271)||(28070057-28070195)
chr5 (76-195)||(42512273-42512390)
chr5 (127-265)||(2826965-2827103)
chr5 (178-268)||(16668743-16668833)
chr5 (179-265)||(18465506-18465592)
chr5 (17-83)||(28069984-28070050)
chr5 (202-271)||(34329150-34329219)
chr5 (179-254)||(8948930-8949003)
chr5 (127-166)||(34329247-34329286)
chr5 (25-83)||(34329293-34329351)
chr5 (229-271)||(42512222-42512264)
chr5 (229-268)||(13553010-13553049)
chr5 (229-268)||(14940356-14940395)
chr5 (229-268)||(15416691-15416730)
chr5 (201-268)||(33868182-33868249)
chr5 (234-268)||(4674987-4675021)
chr5 (234-268)||(16552644-16552678)
chr5 (229-266)||(26637837-26637874)
[»] scaffold0194 (1 HSPs)
scaffold0194 (19-266)||(27635-27880)
[»] chr7 (35 HSPs)
chr7 (19-271)||(46024050-46024300)
chr7 (19-271)||(30428896-30429143)
chr7 (127-266)||(46573398-46573537)
chr7 (133-271)||(15974840-15974978)
chr7 (155-259)||(33797966-33798070)
chr7 (179-268)||(5757413-5757502)
chr7 (179-265)||(32090607-32090693)
chr7 (202-271)||(48690918-48690987)
chr7 (25-83)||(28396892-28396950)
chr7 (25-83)||(48691162-48691220)
chr7 (202-271)||(12279768-12279837)
chr7 (207-268)||(44141229-44141290)
chr7 (32-83)||(15974772-15974823)
chr7 (202-271)||(12279664-12279733)
chr7 (202-271)||(28396745-28396814)
chr7 (114-166)||(48305356-48305406)
chr7 (114-166)||(48691112-48691162)
chr7 (39-83)||(48305406-48305450)
chr7 (198-268)||(48305262-48305332)
chr7 (202-256)||(48691030-48691084)
chr7 (229-266)||(11732647-11732684)
chr7 (122-166)||(28396842-28396886)
chr7 (19-83)||(46573323-46573387)
chr7 (229-268)||(763724-763763)
chr7 (229-268)||(16933244-16933283)
chr7 (229-268)||(16938627-16938666)
chr7 (233-268)||(24359898-24359933)
chr7 (229-268)||(30884222-30884261)
chr7 (229-268)||(31660096-31660135)
chr7 (229-268)||(34875516-34875555)
chr7 (229-268)||(41911109-41911148)
chr7 (229-268)||(46358547-46358586)
chr7 (234-268)||(35736975-35737009)
chr7 (234-268)||(39007654-39007688)
chr7 (229-266)||(20000674-20000711)
[»] chr4 (39 HSPs)
chr4 (19-271)||(22181038-22181287)
chr4 (33-271)||(21097163-21097399)
chr4 (19-268)||(4168384-4168631)
chr4 (19-271)||(27764263-27764518)
chr4 (22-265)||(38485467-38485710)
chr4 (27-200)||(18923353-18923522)
chr4 (114-271)||(45255998-45256155)
chr4 (127-265)||(637883-638021)
chr4 (127-271)||(26447310-26447454)
chr4 (114-271)||(51836977-51837132)
chr4 (155-271)||(36621627-36621743)
chr4 (179-264)||(50563679-50563764)
chr4 (19-83)||(45256155-45256219)
chr4 (19-83)||(51836913-51836977)
chr4 (32-83)||(26447248-26447299)
chr4 (233-268)||(30357834-30357869)
chr4 (207-261)||(6386519-6386573)
chr4 (229-271)||(29826606-29826648)
chr4 (229-271)||(50643766-50643808)
chr4 (32-81)||(638032-638081)
chr4 (229-268)||(1621902-1621941)
chr4 (218-265)||(1729604-1729651)
chr4 (229-268)||(10472524-10472563)
chr4 (229-268)||(11786001-11786040)
chr4 (229-268)||(11798168-11798207)
chr4 (229-268)||(13635725-13635764)
chr4 (229-268)||(15051136-15051175)
chr4 (229-268)||(25574128-25574167)
chr4 (229-268)||(30597726-30597765)
chr4 (229-268)||(35291548-35291587)
chr4 (229-268)||(36011870-36011909)
chr4 (233-268)||(38010168-38010203)
chr4 (229-268)||(46672466-46672505)
chr4 (229-268)||(49492512-49492551)
chr4 (229-268)||(51921265-51921304)
chr4 (234-268)||(24686599-24686633)
chr4 (234-268)||(49426062-49426096)
chr4 (182-223)||(48077817-48077858)
chr4 (229-265)||(26578189-26578225)
[»] scaffold0097 (1 HSPs)
scaffold0097 (19-271)||(13636-13884)
[»] chr2 (19 HSPs)
chr2 (19-271)||(20709797-20710045)
chr2 (114-271)||(25192915-25193070)
chr2 (113-271)||(18297997-18298153)
chr2 (179-252)||(4281738-4281811)
chr2 (179-268)||(25995313-25995402)
chr2 (22-81)||(18297937-18297996)
chr2 (207-271)||(4579796-4579860)
chr2 (114-166)||(4579713-4579763)
chr2 (195-268)||(5098743-5098816)
chr2 (39-83)||(4579669-4579713)
chr2 (202-271)||(14551292-14551360)
chr2 (234-265)||(2263603-2263634)
chr2 (229-268)||(7487254-7487293)
chr2 (229-268)||(15016566-15016605)
chr2 (229-268)||(16142075-16142114)
chr2 (233-268)||(18762894-18762929)
chr2 (43-74)||(25193079-25193110)
chr2 (229-268)||(39355062-39355101)
chr2 (234-268)||(39548069-39548103)
[»] chr3 (34 HSPs)
chr3 (19-271)||(8718124-8718382)
chr3 (19-271)||(9070011-9070269)
chr3 (76-268)||(39099223-39099415)
chr3 (114-271)||(52987537-52987692)
chr3 (127-271)||(50754029-50754173)
chr3 (114-271)||(51362326-51362480)
chr3 (114-271)||(7045188-7045342)
chr3 (127-271)||(19385213-19385357)
chr3 (157-271)||(16277342-16277456)
chr3 (19-83)||(7045124-7045188)
chr3 (19-83)||(51362262-51362326)
chr3 (179-266)||(23699356-23699443)
chr3 (179-266)||(23717811-23717898)
chr3 (179-266)||(23736267-23736354)
chr3 (32-83)||(52987486-52987537)
chr3 (195-256)||(17627197-17627258)
chr3 (33-83)||(19385156-19385206)
chr3 (32-83)||(50754182-50754233)
chr3 (233-268)||(51846784-51846819)
chr3 (229-268)||(3475407-3475446)
chr3 (229-268)||(9595980-9596019)
chr3 (229-268)||(19284698-19284737)
chr3 (179-268)||(23755312-23755394)
chr3 (229-268)||(26662538-26662577)
chr3 (32-83)||(31852284-31852335)
chr3 (229-268)||(33414013-33414052)
chr3 (233-268)||(41192354-41192389)
chr3 (229-268)||(46237758-46237797)
chr3 (229-268)||(47335059-47335098)
chr3 (234-268)||(54379190-54379224)
chr3 (233-266)||(34563351-34563384)
chr3 (229-266)||(47728417-47728454)
chr3 (229-266)||(53594997-53595034)
chr3 (122-158)||(31852242-31852278)
[»] chr6 (18 HSPs)
chr6 (127-264)||(24737589-24737726)
chr6 (114-271)||(33346258-33346413)
chr6 (127-256)||(877246-877375)
chr6 (179-271)||(29157249-29157341)
chr6 (179-265)||(18611218-18611304)
chr6 (195-271)||(34399664-34399740)
chr6 (32-83)||(24737529-24737580)
chr6 (179-271)||(15034920-15035017)
chr6 (32-83)||(33346207-33346258)
chr6 (229-271)||(12394380-12394422)
chr6 (219-268)||(35119261-35119310)
chr6 (233-268)||(30908679-30908714)
chr6 (32-74)||(877390-877432)
chr6 (229-268)||(1449569-1449608)
chr6 (229-268)||(1536896-1536935)
chr6 (229-268)||(6900830-6900869)
chr6 (229-268)||(31216689-31216728)
chr6 (238-266)||(27079939-27079967)
[»] scaffold0238 (2 HSPs)
scaffold0238 (145-271)||(25148-25274)
scaffold0238 (24-83)||(25053-25112)
[»] scaffold0337 (1 HSPs)
scaffold0337 (195-271)||(7040-7116)
[»] scaffold0544 (1 HSPs)
scaffold0544 (196-271)||(10642-10717)
[»] scaffold0571 (1 HSPs)
scaffold0571 (229-268)||(676-715)
[»] scaffold0045 (1 HSPs)
scaffold0045 (229-268)||(33711-33750)
[»] scaffold0189 (1 HSPs)
scaffold0189 (234-271)||(11195-11232)
[»] scaffold0074 (1 HSPs)
scaffold0074 (232-268)||(24301-24337)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 18057055 - 18056807
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  18057055 ctctggtcggcgaccaccgcgctggaatcatcatgtgtggccggaagagataaagactcatctgagttcttcgttttcttttccagaatgttgaaaattg 18056956  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  18056955 tagagag----agggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 18056860  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18056859 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 18056807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 23319877 - 23320111
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |    
T  23319877 ctctggccggcgaccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaattttgaaaatag 23319976  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    ||||||   ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  23319977 tagagaa--agagggatagctttatgttttagtgagagaaatgtttaaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacg 23320074  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgca 255  Q
    ||||| ||| |||| ||||||||||||||||||||||    
T  23320075 tgtacactagatctgatggttgtgaagtgtttatgca 23320111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 45889869 - 45889619
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  45889869 ctctggccggcgaccaccgcgccgaaatcatcatttgtggccggaagagatgaagactcatctgagttcttcgttttctttttcagaatattgaaaattg 45889770  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||     
T  45889769 tagagag--agagggagaactttatgttttagtgagagaaatgtttgaaggaaatgaaatttgatttggtgtagtttgagaagcctaagattattacaca 45889672  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||  ||| |||| |||||||| || ||||||||||||||| ||||| ||||    
T  45889671 tgtatactagatctgatggttgtaaaatgtttatgcacggtggataagaattt 45889619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 22348217 - 22348062
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  22348217 aattgtagagag--agagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattatt 22348120  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| || | ||||||||||||||||||||| ||||||||||||||||    
T  22348119 acacgtgtacactagatatgatggttgtgaagtgtttatgcgcggtgcataaggattt 22348062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 255
Target Start/End: Original strand, 8402196 - 8402337
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  8402196 aattgtagagagagagagagagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtttagtttgagaaacctaggattatt 8402295  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgca 255  Q
    ||| |||||| ||| |||| |||||| |||||||||||||||    
T  8402296 acatgtgtacactagatctgatggttatgaagtgtttatgca 8402337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 114 - 256
Target Start/End: Complemental strand, 179786 - 179646
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |  |||||||    
T  179786 aattgtagagag--agagggagagctttatgttttagtgagagaaatgttttaagcaaatgaagtttgatttggtgtagtttgagaagcttgggattatt 179689  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcac 256  Q
    |||||||||| ||| |||| |||||||||||||||||||||||    
T  179688 acacgtgtacactagatctgatggttgtgaagtgtttatgcac 179646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 30802535 - 30802437
Alignment:
Q  155 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatg 253  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||| ||||||||||| ||||||||    
T  30802535 agaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaagattattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 37639457 - 37639368
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||  |||  |||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||    
T  37639457 ttgatttggtgtagtttgagaagtctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 37639368  T

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Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 16115966 - 16115874
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||||||||||||||| ||||  ||  |||||||||||||||||  || || | ||||||||||||||||||||||||||||||||||||||    
T  16115966 ttgatttggtgtagtttaagaagtcttggattattacacgtgtacattagatttgatggttgtgaagtgtttatgcacggtgcataaggattt 16115874  T

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Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 35198131 - 35198220
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||| ||||||||||| ||  ||| ||||||||||||||||| ||| |||| |||| ||||||||||||||||| ||||||||||||    
T  35198131 ttgattttgtgtagtttgaaaagtctaggattattacacgtgtacactagatctgatggctgtgaagtgtttatgcagggtgcataagga 35198220  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 8402145 - 8402196
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| ||||||||    
T  8402145 ccaccgcgccggaatcatcatgtttggccggaaaagatgaagactcatctga 8402196  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 179833 - 179786
Alignment:
Q  36 cgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  179833 cgcgccgaaatcatcatgtgtggccgaaagagatgaagactcatctga 179786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 11421660 - 11421621
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  11421660 atctgatggttgtgaagtgtttatgcacggtgcataagga 11421621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 20434722 - 20434761
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  20434722 atctaatggttgtgatgtgtttatgcacggtgcataagga 20434761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 22348268 - 22348221
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcat 79  Q
    ||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  22348268 ccaccgcggtggaatcatcatgtgtggccggaagagatgaagactcat 22348221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 48762331 - 48762370
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  48762331 atctaatggttgtgatgtgtttatgcacggtgcataagga 48762370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 4097913 - 4097947
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||||||||||||||||    
T  4097913 atggttgtgaagtgtttatgcacggtgcataagga 4097947  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 21256776 - 21256809
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataag 266  Q
    ||||||||||||||||||||||||||||||||||    
T  21256776 aatggttgtgaagtgtttatgcacggtgcataag 21256809  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 34369726 - 34369689
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34369726 atctgatggttgtgaagtgtttatgcacggtgcataag 34369689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 18618901 - 18618862
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  18618901 atctgatggttgtgatgtgtttatgcacggtgcataagga 18618862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 24635992 - 24635953
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  24635992 atctgatggttgtgatgtgtttatgcacggtgcataagga 24635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 25889028 - 25889067
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  25889028 atctgatggttgtgatgtgtttatgcacggtgcataagga 25889067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 31529665 - 31529704
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  31529665 atctgatggttgtgaagtgtttatgcatggtgcataagga 31529704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 33097471 - 33097432
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  33097471 atctgatggttgtgaagtgtttatgcagggtgcataagga 33097432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 44260584 - 44260545
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  44260584 atctgatggttgtgaagtgtttatgcagggtgcataagga 44260545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 49936937 - 49936976
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  49936937 atctgatggttgtgatgtgtttatgcacggtgcataagga 49936976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 50351869 - 50351830
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  50351869 atctgatggttgtgatgtgtttatgcacggtgcataagga 50351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 23175527 - 23175561
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||| |||||||||    
T  23175527 atggttgtgaagtgtttatgcacggcgcataagga 23175561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 51801738 - 51801772
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  51801738 atggttgtgaagtgtttatgcagggtgcataagga 51801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 28375530 - 28375494
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    |||| |||||||||| |||||||||||||||||||||    
T  28375530 atctgatggttgtgatgtgtttatgcacggtgcataa 28375494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 39022248 - 39021998
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||  | |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39022248 ctctggccgatgaccaccgcgtcggaatcatcatgtgtggccggaagagatgaagactcatctaagttcttcgttttcttttccagaatgttgaaaattg 39022149  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||     
T  39022148 tagagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacaca 39022051  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  39022050 tgtacactagatctgatgattgtgaagtgtttatgcacggtgcataaggattt 39021998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 32987240 - 32987487
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  32987240 ctctgggcggcgaccactgcgccggaatcatcatgtgtggccggaa-agatgaagactcatatgagttcttcgttttcttttccagaatgttgaaaattg 32987338  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  32987339 tagagag----agggagagctttatgttttagttagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 32987434  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  32987435 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 32987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 43 - 268
Target Start/End: Original strand, 15260667 - 15260890
Alignment:
Q  43 gaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagtgagagggagagcttta 142  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  15260667 gaatcatcatatgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagag--agagggagagtttta 15260764  T
Q  143 tgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtg 242  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||||||| ||| || | |||||||||    
T  15260765 tattttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagccttggattattaaacgtgtacactagatttgatggttgtg 15260864  T
Q  243 aagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||    
T  15260865 aagtgtttatgcacggtgcataagga 15260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 4836588 - 4836743
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | || |||||||    
T  4836588 aattgtagagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattatt 4836685  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  4836686 acacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcattt 4836743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 4842033 - 4842188
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | || |||||||    
T  4842033 aattgtagagag--agagggagagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgaaaagcttaggattatt 4842130  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  4842131 acacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagcattt 4842188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 7058292 - 7058137
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||| |||||||    
T  7058292 aattgtagagag--agagggagagctttatgttttagtgagagaagtgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattatt 7058195  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||  ||||||||||||||||||||||||||||||||| ||||    
T  7058194 acacgtgtacactagatcggatggttgtgaagtgtttatgcacggtgcataagtattt 7058137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 8550670 - 8550530
Alignment:
Q  128 agagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgcta 227  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||| |||    
T  8550670 agagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcttatgattattacacgtgtacacta 8550571  T
Q  228 tatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
     |||| |||||||||||||||||||||||||||||||||||    
T  8550570 gatctgatggttgtgaagtgtttatgcacggtgcataagga 8550530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 7614207 - 7614093
Alignment:
Q  155 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgc 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  || |||| |||||||||||||||||||||    
T  7614207 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctatgattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 7614108  T
Q  255 acggtgcataaggat 269  Q
    | |||||||||||||    
T  7614107 atggtgcataaggat 7614093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 2750205 - 2750101
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||  ||| |||||||    
T  2750205 aattgtagagagagtgagggagagcattatgttttagtgagagaaatgtttaaagtaaatgaagtttgatttggtgtagtttgagaagtctatgattatt 2750106  T
Q  214 acacg 218  Q
    |||||    
T  2750105 acacg 2750101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 15181906 - 15181817
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||||||    
T  15181906 ttgatttggtgtagtttgagaaacctaagattattacacgtgtacactagatctgatgcttgtgaagtgtttatgcagggtgcataagga 15181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 1208801 - 1208732
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||    
T  1208801 cctaggattattacacgtgtacactagatcttatggttgtaaagtgtttatgcacggtgcataaggattt 1208732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4836537 - 4836588
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  4836537 ccaccacgccggaatcatcatgtgtggccggaagagatgaagactcatctga 4836588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4841982 - 4842033
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  4841982 ccaccacgccggaatcatcatgtgtggccggaagagatgaagactcatctga 4842033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 1208868 - 1208829
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1208868 gagagggagagctttatgttttagtgagagaaatgtttga 1208829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 8550733 - 8550682
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  8550733 ccaccgcgccagaatcatcatgtgtggccgtaagagatgaagactcatctga 8550682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 39658372 - 39658426
Alignment:
Q  25 ccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcat 79  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||| ||||    
T  39658372 ccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcat 39658426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 7058343 - 7058292
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||| ||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  7058343 ccactgcgccagaatcatcatgtgtggccgaaagagatgaagactcatctga 7058292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 9852332 - 9852297
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  9852332 aatggttgtgaagtgtttatgcacggtgcataagga 9852297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 34648132 - 34648167
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  34648132 aatggttgtgaagtgtttatgcacggtgcataagga 34648167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 1208935 - 1208877
Alignment:
Q  25 ccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| || ||| || |||||||||||||||||||| |||||||||||| ||||||||    
T  1208935 ccggcggccgccgtgctggaatcatcatgtgtggccgcaagagatgaagactcatctga 1208877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 42433766 - 42433724
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  42433766 atctgatggttgtgaagtgcttatgcacggtgcataaggattt 42433724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 12355488 - 12355451
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  12355488 atctaatggttgtgaagtgtttatgcagggtgcataag 12355451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 35302590 - 35302623
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataag 266  Q
    ||||||||||||||||||||||||||||||||||    
T  35302590 aatggttgtgaagtgtttatgcacggtgcataag 35302623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 10237420 - 10237381
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  10237420 atctgatggttgtgatgtgtttatgcacggtgcataagga 10237381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 19784337 - 19784298
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  19784337 atctgatggttgtgatgtgtttatgcacggtgcataagga 19784298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 23396539 - 23396504
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23396539 aatggttgtaaagtgtttatgcacggtgcataagga 23396504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 30413980 - 30413941
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  30413980 atctgatggttgtgatgtgtttatgcacggtgcataagga 30413941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 34633321 - 34633360
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  34633321 atctgatggttgtgatgtgtttatgcacggtgcataagga 34633360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 41099248 - 41099209
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  41099248 atctgatggttgtgatgtgtttatgcacggtgcataagga 41099209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 43690706 - 43690667
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  43690706 atctgatggttgtgatgtgtttatgcacggtgcataagga 43690667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 40247290 - 40247324
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  40247290 atggttgtgaagtgtttatgcagggtgcataagga 40247324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 1150028 - 1150061
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagg 267  Q
    |||||||||| |||||||||||||||||||||||    
T  1150028 atggttgtgatgtgtttatgcacggtgcataagg 1150061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 30652009 - 30651976
Alignment:
Q  235 tggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||| ||||||||||||    
T  30652009 tggttgtgaagtgtttatgcagggtgcataagga 30651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 2750254 - 2750205
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||| ||||||| |  |||||||||||||||||||||| ||||||||    
T  2750254 ccaccgcgctggaatcaac--gtgtggccggaagagatgaagactcatctga 2750205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 23335496 - 23335749
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  23335496 ctctggccggcgaccaccgcgccggaatcatcatgtgtggctggaagagatgaagactcatctgagttctttgttttcttttccataatgttgaaaattg 23335595  T
Q  119 tagagagtgagagggagagctttatg-ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacac 217  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  23335596 tagagagagagagggagagctttatgtttttagtgagagaaatgtttgatgcaaatgaactttgatttggtgtagtttgagaagcctatgattattacac 23335695  T
Q  218 gtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||| ||| |||| ||||||||||| ||||||||||||||||||| ||||||    
T  23335696 gtgtacactagatctgatggttgtgaaatgtttatgcacggtgcatacggattt 23335749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 13363050 - 13362793
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13363050 ctctggccggcaaccaccgcgccggaatcatcatgtgtggccggaagagat-aagactcatttgagttcttcgttttcttttccagaatgttgaaaattg 13362952  T
Q  119 tagagagtgagag------ggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattat 212  Q
    ||||||| |||||      ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  13362951 tagagagagagagacagagggaaagctttatgttttagtgagagaaatgtttgaagcaaatgaattttgatttggtgtagtttgagaagcctatgattat 13362852  T
Q  213 tacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  13362851 tacacgtatacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 13362793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 25017026 - 25017259
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||| |||| | |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  25017026 ctctggccggcgaccatcgcgtcagaatcatcatgtgttgccggaagagatgaagactcatctgagtacttcgttttcttttccagaatgttgaaaattg 25017125  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    ||||    |||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||  |||||||||||    
T  25017126 taga----gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga---------------agtttgagaaacctaaaattattacacg 25017206  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  25017207 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 25017259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 28070057 - 28070195
Alignment:
Q  133 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatct 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||| ||||    
T  28070057 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatct 28070156  T
Q  233 aatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
     || |||||||||||||||||||||||||||||||||||    
T  28070157 gatagttgtgaagtgtttatgcacggtgcataaggattt 28070195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 42512390 - 42512273
Alignment:
Q  76 tcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  42512390 tcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagag--agagggagagctttaggttttagtgagagaaatgtttgaagtaaatga 42512293  T
Q  176 agtttgatttggtgtagttt 195  Q
    ||||||||||||||||||||    
T  42512292 agtttgatttggtgtagttt 42512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 2826965 - 2827103
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||| ||    
T  2826965 gagagggagagctttatgttttagtgagataaatgtttgaagcaaatgaaatttgatttggtgtagtttgagaagcctaagataattacacgtgtacact 2827064  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    | |||| |||||||| |||||||||||||||||| ||||    
T  2827065 agatctgatggttgtaaagtgtttatgcacggtggataa 2827103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 268
Target Start/End: Original strand, 16668743 - 16668833
Alignment:
Q  178 tttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||    
T  16668743 tttgatttggtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcataagga 16668833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 18465506 - 18465592
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||| ||| |||| |||||||||||||||||||||| | |||||||    
T  18465506 ttgatttggtgtagtttgagaagtctaagattattacacgtgtacactagatctgatggttgtgaagtgtttatgcaggatgcataa 18465592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 28069984 - 28070050
Alignment:
Q  17 cactctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  28069984 cactctggccgacgaccaccgcgtcggaatcatcatgtgtggccggaagagatgaagactcatctga 28070050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 34329219 - 34329150
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||  ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||    
T  34329219 cctatgattattattcgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaagattt 34329150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 8949003 - 8948930
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgc 254  Q
    |||||||||||||||||||||| |||| ||||||  ||||||||| ||| |||| || ||| ||||||||||||||    
T  8949003 ttgatttggtgtagtttgagaagcctaggattat--cacgtgtacactaaatctgatagttttgaagtgtttatgc 8948930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 34329286 - 34329247
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  34329286 gagagagagagctttatgttttagtgagagaaatgtttga 34329247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 34329351 - 34329293
Alignment:
Q  25 ccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| || ||| |||| |||||||||||||||||||||||||||||||  |||||||    
T  34329351 ccggcggccgccgtgccgaaatcatcatgtgtggccggaagagatgaagacccatctga 34329293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 42512264 - 42512222
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  42512264 atctgatggttgtgaagtgtttatgcacggtggataaggattt 42512222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 13553049 - 13553010
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  13553049 atctgatggttgtgatgtgtttatgcacggtgcataagga 13553010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 14940356 - 14940395
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  14940356 atctgatggttgtgatgtgtttatgcacggtgcataagga 14940395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 15416730 - 15416691
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  15416730 atctgatggttgtgatgtgtttatgcacggtgcataagga 15416691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 33868249 - 33868182
Alignment:
Q  201 acctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||| ||||||||||| ||||   || |||  |||||||||||||||||||||| ||||||||||||    
T  33868249 acctaggattattacacatgtaaaataaatcagatggttgtgaagtgtttatgcagggtgcataagga 33868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 4675021 - 4674987
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  4675021 atggttgtgaagtgtttatgcagggtgcataagga 4674987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 16552644 - 16552678
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  16552644 atggttgtgaagtgtttatgcatggtgcataagga 16552678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 26637837 - 26637874
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  26637837 atctgatggttgtgatgtgtttatgcacggtgcataag 26637874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 27880 - 27635
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27880 ctctggctggcgaccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattg 27781  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    ||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  27780 tagagaa--agagggagagatttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctagaattattacacg 27683  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    ||||| ||| |||| || ||||||||||||||||||||||| ||||||    
T  27682 tgtacactagatcttatagttgtgaagtgtttatgcacggtacataag 27635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 46024300 - 46024050
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  46024300 ctctggccggcgaccaccgcgccggaatcatcatgtgtggtcggaagagatgaagactaatctgagttcttcgttttcttttccaaaatgttgaaaattg 46024201  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    ||||||   ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||  ||| ||||||||||||    
T  46024200 tagagat--agagggagaactttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttaatgtagtttgagaagtctaggattattacacg 46024103  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  46024102 tgtacactatatctgatggttgtgaagtgtttatgcacggtgcataaggattt 46024050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 30429143 - 30428896
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||    
T  30429143 ctctggccggcgaccaccgcgc-ggaatcatcatgtatggccggaagagatgaagactcgtctgagttcttcgttttcttttctagaatgttgaaaattg 30429045  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  30429044 tagagag----agggggagctttatgttttagtgagataaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacg 30428949  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  30428948 tgtacactagatctgatggttgtgaaatgtttatgcacggtgcataaggattt 30428896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 46573398 - 46573537
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||    
T  46573398 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacact 46573497  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    | |||| |||||||||||||||||||  ||||||||||||    
T  46573498 agatctgatggttgtgaagtgtttatatacggtgcataag 46573537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 15974840 - 15974978
Alignment:
Q  133 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatct 232  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||| |||||| ||| || |    
T  15974840 gagagctttatgttttagtgagagaaatgtttgaagcagatgaagtttgatttggtgtactttgataagcctaagattattacatgtgtacactaaatat 15974939  T
Q  233 aatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
     ||||||||||||||||||||||||||||||||||||||    
T  15974940 gatggttgtgaagtgtttatgcacggtgcataaggattt 15974978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 33798070 - 33797966
Alignment:
Q  155 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgc 254  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||  ||| |||| ||||||||||| |||||||||    
T  33798070 agaaatgtttgaagcaaatgaagtttgatttgatgtagtttgagaagtctaggattattacacgtgtatactagatctgatggttgtgaaatgtttatgc 33797971  T
Q  255 acggt 259  Q
    |||||    
T  33797970 acggt 33797966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 5757502 - 5757413
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  5757502 ttgatttggtgtagtttgagaagtctaggattattacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 5757413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 32090693 - 32090607
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    |||||||||||||||||||||| |||| ||||||||||||||||  ||| || | |||||| |||| |||||||||| |||||||||    
T  32090693 ttgatttggtgtagtttgagaagcctatgattattacacgtgtatactagatttgatggttctgaattgtttatgcagggtgcataa 32090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 48690987 - 48690918
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||||||||||| ||| || | ||||||||||| ||||||||||||||||||||||||||    
T  48690987 cctatgattattacacgtgtacactagatttgatggttgtgaactgtttatgcacggtgcataaggattt 48690918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 28396950 - 28396892
Alignment:
Q  25 ccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  28396950 ccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctga 28396892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 48691220 - 48691162
Alignment:
Q  25 ccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  48691220 ccggcggccgccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctga 48691162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 12279837 - 12279768
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||| ||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| |||||    
T  12279837 cctaggatcattacacgtatacactagatctaatggttgtgaagtctttatgcacggtgcataaagattt 12279768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 44141229 - 44141290
Alignment:
Q  207 gattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||| ||| |||  |||||||||||||||||||||| ||||||||||||    
T  44141229 gattattacacgtgtacactaaatcagatggttgtgaagtgtttatgcagggtgcataagga 44141290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 15974772 - 15974823
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  15974772 ccaccgcgccggaatcatcatgtgtgatcggaagagatgaagactcatctga 15974823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 12279733 - 12279664
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||| ||||||||||||| ||  |||||||||||||||||| ||||| |||||||||||| |||||    
T  12279733 cctaggatcattacacgtgtacactggatctaatggttgtgaagtctttatacacggtgcataatgattt 12279664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 28396814 - 28396745
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||| | ||||| ||| |||| ||| ||||||| ||||||||||||||||||||||||||    
T  28396814 cctaggattattactcttgtacactagatctgatgattgtgaaatgtttatgcacggtgcataaggattt 28396745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 48305406 - 48305356
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  48305406 aattgtagagag--agagggagagctttatgttttattgagagaaatgtttga 48305356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 48691162 - 48691112
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  48691162 aattgtagagag--agagggagagctttatgttttagtgagagaaatttttga 48691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 48305450 - 48305406
Alignment:
Q  39 gccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||    
T  48305450 gccggaatcatcatgtgtggccggaagtgatgaagactcatctga 48305406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 48305332 - 48305262
Alignment:
Q  198 gaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| ||| |||||||| |||||||| ||| |||  ||| |||| ||||||||||||||||||||||||||    
T  48305332 gaaaactaggattattatacgtgtacactagatccgatgtttgtaaagtgtttatgcacggtgcataagga 48305262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 48691084 - 48691030
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcac 256  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||||||| |||||||    
T  48691084 cctaggattattacacgtgtacactagatctgatggttgtgaagtgtctatgcac 48691030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 11732647 - 11732684
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11732647 atctaatggttgtgaagtgtttatgcacagtgcataag 11732684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 28396886 - 28396842
Alignment:
Q  122 agagtgagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    |||| |||||||||| |||||||||||| ||||||||||||||||    
T  28396886 agagagagagggagaactttatgttttattgagagaaatgtttga 28396842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 46573323 - 46573387
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||| |  |||||||| || |||||||||||||| || ||||||||||||| ||||||||    
T  46573323 ctctggccgactaccaccgcgtcgaaatcatcatgtgtgccctgaagagatgaagactcatctga 46573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 763763 - 763724
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  763763 atctgatggttgtgacgtgtttatgcacggtgcataagga 763724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 16933244 - 16933283
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  16933244 atctgatggttgtgatgtgtttatgcacggtgcataagga 16933283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 16938627 - 16938666
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  16938627 atctgatggttgtgatgtgtttatgcacggtgcataagga 16938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 24359933 - 24359898
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24359933 aatggttgtgaagtgttgatgcacggtgcataagga 24359898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 30884222 - 30884261
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  30884222 atctgatggttgtgatgtgtttatgcacggtgcataagga 30884261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 31660135 - 31660096
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  31660135 atctgatggttgtgatgtgtttatgcacggtgcataagga 31660096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 34875555 - 34875516
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  34875555 atctgatggttgtgaagtgtttatgcagggtgcataagga 34875516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 41911109 - 41911148
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  41911109 atctgatggttgtgatgtgtttatgcacggtgcataagga 41911148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 46358586 - 46358547
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  46358586 atctgatggttgtgatgtgtttatgcacggtgcataagga 46358547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 35737009 - 35736975
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||| ||||||||||||||||||||||||    
T  35737009 atggttgtgatgtgtttatgcacggtgcataagga 35736975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 39007654 - 39007688
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  39007654 atggttgtgaagtgtttatgcagggtgcataagga 39007688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 20000674 - 20000711
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  20000674 atctgatggttgtgatgtgtttatgcacggtgcataag 20000711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 22181038 - 22181287
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||    
T  22181038 ctctggccggcgaccaccgcgccagaatcatcatgtgtggccggaagagatgaaaactcatttgagttcttcgttttcttttccagaatgttgaaa-ttg 22181136  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||  ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22181137 tagagag--agaggaaaagctttatgttttagtgagagaaatgtttgaggcaaatgaagtttgatttggtgtagtttgagaaacctaggattattacacg 22181234  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  22181235 tgtacactaaatctgatggttgtgaagtttttatgcacggtgcataaggattt 22181287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 33 - 271
Target Start/End: Complemental strand, 21097399 - 21097163
Alignment:
Q  33 caccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagtgagagg 132  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  21097399 caccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattgtagaga--gagagg 21097302  T
Q  133 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatct 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || | ||  |||||||||||||||  ||| ||||    
T  21097301 gagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttaataagcttagaattattacacgtgtaaactagatct 21097202  T
Q  233 aatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  21097201 aatggttgtgaagtgtttatacacggtgcataaggattt 21097163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 4168631 - 4168384
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||  |||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4168631 ctctggccggcaaccaccgcagtggaatcatcatgtgtggccggaagagatgaagactcatctgagttcttcgttttcttttccagaatgttgaaaattg 4168532  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    ||||||   |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  4168531 tagagat--agagtgaaagctttatgttttagtgagagaaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaaacctaggattattacatg 4168434  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  4168433 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 4168384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 27764518 - 27764263
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttc---gttttcttttccagaatgttgaaaa 115  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||   |||||||||| ||||||||||||||    
T  27764518 ctctggccggcgacgaccgcgtcggaatcatcatgtgtggccggaagagatgaagactcatctgaattcttcttcgttttctttttcagaatgttgaaaa 27764419  T
Q  116 ttgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattac 215  Q
    ||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | || |||||||||    
T  27764418 ttggagagagagagagggagaactttatgttttagtgagagaaatgtttgaagcaaataaggtttgatttggtgtagtttgagaagcgtaggattattac 27764319  T
Q  216 acgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  27764318 acgtgtacactagatctgatggttgcgaagtgtttatgcacggtgcataaggattt 27764263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 38485467 - 38485710
Alignment:
Q  22 tggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattgtag 121  Q
    ||||||||| |||||| |||||||| || |||||||||||||||||||||||| |||| |||||| |||||||| ||||||| ||| |||||||||||||    
T  38485467 tggccggcgaccaccgtgccggaattattatgtgtggccggaagagatgaagactcatatgagtttttcgtttttttttccataatattgaaaattgtag 38485566  T
Q  122 agagtgagagggagagctttatgtttt--agtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgt 219  Q
    ||||  ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||  |||| |||||||| |||| |||||||||||||    
T  38485567 agag--agagggagatctttatgttttttagtgagagaaatgtttgaagcaaatgaagtttgatttaatgtattttgagaagcctaggattattacacgt 38485664  T
Q  220 gtacgctatatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    ||||  || |||| |||||||||||| |||||||||||||||||||    
T  38485665 gtacattagatctgatggttgtgaagcgtttatgcacggtgcataa 38485710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 18923522 - 18923353
Alignment:
Q  27 ggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagt 126  Q
    |||| |||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||        
T  18923522 ggcgaccactgcgccggaatcatcatgtgtggtcggaagagatgaagactcatctgagttcttcgttttctttttcagaatgttgaaaattgtaga---- 18923427  T
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaa 200  Q
    |||||||| || ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  18923426 gagagggatagttttatgttttagtgacagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaa 18923353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 45256155 - 45255998
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |||||||    
T  45256155 aattgtagagagagagggggggagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttgatgtagtttgaaaagcctaggattatt 45256056  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  45256055 acacgtgtacactatatctgatagttgtgaagtgtttatgcacggtgcataaggattt 45255998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 638021 - 637883
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| ||||| ||    
T  638021 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaaaattattacacatgtacact 637922  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    | |||| ||||||||||||||||||||||||||||||||    
T  637921 agatctgatggttgtgaagtgtttatgcacggtgcataa 637883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 26447310 - 26447454
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||  |||||||||||||||| ||    
T  26447310 gagagggagaactttatgttttagtgagagaaatgtttgaagcaaatgaaatttgatttggtgtaatttgtgaagcctagaattattacacgtgtacact 26447409  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    | |||| ||||||||||||||||||||||||||||||||||||||    
T  26447410 agatctgatggttgtgaagtgtttatgcacggtgcataaggattt 26447454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 51836977 - 51837132
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaa-tgaagtttgatttggtgtagtttgagaaacctacgattat 212  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||    
T  51836977 aattgtagagag--agagggagagctttatgttttagtgagagaaatgtttgaagtaaaatgaagtttgatttggtgtagtttgagaagcctaggattat 51837074  T
Q  213 tacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||  || |||| ||||||||||||| ||||||| || || ||||||||||    
T  51837075 tacacgtgtacattaaatctgatggttgtgaagtatttatgctcgatg-ataaggattt 51837132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 36621627 - 36621743
Alignment:
Q  155 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgc 254  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||  || |||| |||||||||||||||||||||    
T  36621627 agaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcataggattattacacgtgtacattagatctgatggttgtgaagtgtttatgc 36621726  T
Q  255 acggtgcataaggattt 271  Q
    |||||||||||||||||    
T  36621727 acggtgcataaggattt 36621743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 50563679 - 50563764
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcata 264  Q
    |||||||||||||||||||||||||||  |||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||    
T  50563679 ttgatttggtgtagtttgagaaacctataattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcata 50563764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 45256219 - 45256155
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  45256219 ctctggccggcgaccaccgcgccggaatcatcctgtgtggccggaagagatgaagactcatctga 45256155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 51836913 - 51836977
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  51836913 ctctggtcggcgaccaccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctga 51836977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 26447248 - 26447299
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||    
T  26447248 ccaccgcgctggaatcatcatgtgtggccggaagagatgaggactcatctga 26447299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 30357869 - 30357834
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  30357869 aatggttgtgaagtgtttatgcacggtgcataagga 30357834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 6386519 - 6386573
Alignment:
Q  207 gattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgc 261  Q
    ||||||||||||||| | ||| |||| |||||||||||||||||||||| |||||    
T  6386519 gattattacacgtgtccactaaatctgatggttgtgaagtgtttatgcagggtgc 6386573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 29826606 - 29826648
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  29826606 atctgatggttgtgaagtgcttatgcacggtgcataaggattt 29826648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 50643808 - 50643766
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  50643808 atctgatggttatgaagtgtttatgcacggtgcataaggattt 50643766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 638081 - 638032
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatct 81  Q
    |||||| | |||||||||| ||||||||||||||||||||||| ||||||    
T  638081 ccaccgtgtcggaatcatcgtgtgtggccggaagagatgaagactcatct 638032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 1621941 - 1621902
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1621941 atctgatggttgtgatgtgtttatgcacggtgcataagga 1621902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 1729604 - 1729651
Alignment:
Q  218 gtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    |||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  1729604 gtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataa 1729651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 10472563 - 10472524
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  10472563 atctgatggttgtgaaatgtttatgcacggtgcataagga 10472524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 11786040 - 11786001
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  11786040 atctgatggttgtgatgtgtttatgcacggtgcataagga 11786001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 11798207 - 11798168
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  11798207 atctgatggttgtgatgtgtttatgcacggtgcataagga 11798168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 13635725 - 13635764
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  13635725 atctgatggttgtgatgtgtttatgcacggtgcataagga 13635764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 15051136 - 15051175
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  15051136 atctgatggttgtgatgtgtttatgcacggtgcataagga 15051175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 25574128 - 25574167
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  25574128 atctgatggttgtgaagtgtttatgcagggtgcataagga 25574167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 30597765 - 30597726
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  30597765 atctgatggttgtgatgtgtttatgcacggtgcataagga 30597726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 35291548 - 35291587
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  35291548 atcttatggttgtgatgtgtttatgcacggtgcataagga 35291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 36011909 - 36011870
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  36011909 atctgatggttgtgatgtgtttatgcacggtgcataagga 36011870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 38010203 - 38010168
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38010203 aatggttgtgaagtgtttatgcatggtgcataagga 38010168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 46672505 - 46672466
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  46672505 atctgatggttgtgatgtgtttatgcacggtgcataagga 46672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 49492512 - 49492551
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  49492512 atctgatggttgtgatgtgtttatgcacggtgcataagga 49492551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 51921265 - 51921304
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  51921265 atctgatggttgtgatgtgtttatgcacggtgcataagga 51921304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 24686633 - 24686599
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  24686633 atggttgtgaagtgtttatgcagggtgcataagga 24686599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 49426062 - 49426096
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||| ||||||||||||||||||||||||    
T  49426062 atggttgtgatgtgtttatgcacggtgcataagga 49426096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 48077817 - 48077858
Alignment:
Q  182 atttggtgtagtttgagaaacctacgattattacacgtgtac 223  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  48077817 atttggtgtagtttgagaagcctaggattattacacatgtac 48077858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 26578189 - 26578225
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    |||| |||||||||||||||||||||||| |||||||    
T  26578189 atctgatggttgtgaagtgtttatgcacgatgcataa 26578225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 13884 - 13636
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  13884 ctctggccggcgaccatcgcaccggaatcatcatgtgtgaccggaagagatgaagactcatctgagttcttcgttttcttttccagagagttgaaaattg 13785  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |    
T  13784 tagagag----agggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatg 13689  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  13688 tgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggattt 13636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 20710045 - 20709797
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  20710045 ctctggccggcgaccatcgcaccggaatcatcatgtgtgaccggaagagatgaagactcatctgagttcttcgttttcttttccagagagttgaaaattg 20709946  T
Q  119 tagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacg 218  Q
    |||||||    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |    
T  20709945 tagagag----agggagaactttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacatg 20709850  T
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  20709849 tgtacactagatctgatggttgtgaagtgtttatgcacggtggataaggattt 20709797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 114 - 271
Target Start/End: Complemental strand, 25193070 - 25192915
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||    
T  25193070 aattgtagagag--agagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtaatttgagaagcctagaattatt 25192973  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  25192972 acacgtgtacactagatctaatggttgtgaagtgtttatgcacggtgcataaggattt 25192915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 113 - 271
Target Start/End: Original strand, 18297997 - 18298153
Alignment:
Q  113 aaattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattat 212  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  18297997 aaattgtagagag--agagggagagatttatgttttagtgagagaaacgcttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattat 18298094  T
Q  213 tacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18298095 tacacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 18298153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 4281738 - 4281811
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttat 252  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||||    
T  4281738 ttgatttgctgtagtttgagaaacctaggattattacacgtgtacactagatctgatggttgtgaagtgtttat 4281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 25995402 - 25995313
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||| |||||| | |||| ||||||||||||||||| ||| |||| ||||||||||||| ||||||||  |||||||||||    
T  25995402 ttgatttggtgtaatttgagtagcctaggattattacacgtgtacactaaatctgatggttgtgaagtatttatgcagagtgcataagga 25995313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 18297937 - 18297996
Alignment:
Q  22 tggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatct 81  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  18297937 tggccggcgaccaccgcgccggaatcatcatgtgtggtcggaagagatgaagactcatct 18297996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 4579796 - 4579860
Alignment:
Q  207 gattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||    
T  4579796 gattattacacgtgtacactagatctgatggttgtaaagtgtttatgcatggtgcataaggattt 4579860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 4579713 - 4579763
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttga 166  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  4579713 aattgtagagag--agagggagagctttatgttttagtgagagaaatgtttga 4579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 5098816 - 5098743
Alignment:
Q  195 tgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||| ||||| |||||||||||||||||  || || | |||||||||||||||||||||| ||||||||||||    
T  5098816 tgagagacctaggattattacacgtgtacaataaatttgatggttgtgaagtgtttatgcagggtgcataagga 5098743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 4579669 - 4579713
Alignment:
Q  39 gccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  4579669 gccggaatcatcatgtgtggccggaagagatgaagactcatctga 4579713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 14551292 - 14551360
Alignment:
Q  202 cctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||| ||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||| ||||    
T  14551292 cctaggattattacacatgtacactagatctgatggttgtgaagtgtttatgcac-gtgcataagaattt 14551360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Complemental strand, 2263634 - 2263603
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataa 265  Q
    ||||||||||||||||||||||||||||||||    
T  2263634 atggttgtgaagtgtttatgcacggtgcataa 2263603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 7487254 - 7487293
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  7487254 atctgatggttgtgatgtgtttatgcacggtgcataagga 7487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 15016566 - 15016605
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  15016566 atctgatggttgtgatgtgtttatgcacggtgcataagga 15016605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 16142075 - 16142114
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  16142075 atctaatggttgtgaagtgtttatgcagcgtgcataagga 16142114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 18762929 - 18762894
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18762929 aatggttgtgatgtgtttatgcacggtgcataagga 18762894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 25193110 - 25193079
Alignment:
Q  43 gaatcatcatgtgtggccggaagagatgaaga 74  Q
    ||||||||||||||||||||||||||||||||    
T  25193110 gaatcatcatgtgtggccggaagagatgaaga 25193079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 39355101 - 39355062
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  39355101 atctgatggttgtgatgtgtttatgcacggtgcataagga 39355062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 39548103 - 39548069
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||||||||||||| ||||||||||||    
T  39548103 atggttgtgaagtgtttatgcagggtgcataagga 39548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 8718382 - 8718124
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  8718382 ctctggccggtgaccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctgatttcttcgttttcttttccagaatgttgaaaattg 8718283  T
Q  119 tagagagtgagagggagag------ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattat 212  Q
    ||||||| ||||| |||||      ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||| ||||||    
T  8718282 tagagagagagagagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattat 8718183  T
Q  213 tacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||    
T  8718182 tacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcataaggattt 8718124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 9070269 - 9070011
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctgagttcttcgttttcttttccagaatgttgaaaattg 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  9070269 ctctggccggtgaccaccgcgccggaatcatcatgtgtggccggaagagatgaagactcatctgatttcttcgttttcttttccagaatgttgaaaattg 9070170  T
Q  119 tagagagtgagagggagag------ctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattat 212  Q
    ||||||| ||||| |||||      ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||| ||||||    
T  9070169 tagagagagagagagagagggaaagctttatgttttagtgagagaaatgttttaaacaaatgaagtttgatttggtgtagtttaagaagcctaggattat 9070070  T
Q  213 tacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||| ||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||    
T  9070069 tacacatgtacactagatctgatggttgtgaagtatttatgtacggtgcataaggattt 9070011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 76 - 268
Target Start/End: Complemental strand, 39099415 - 39099223
Alignment:
Q  76 tcatctgagttcttcgttttcttttccagaatgttgaaaattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatga 175  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| || |||||||    
T  39099415 tcatctgagttcttcattttttcttcgagaatgttgaaaattgtagagaaagagagggagagctttatgttttagtgagagaaatgttttaaacaaatga 39099316  T
Q  176 agtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||| ||| |||| ||||||||||| | |||||||||||||||||||||    
T  39099315 agtttgatttagtgtagtttgagaagcctaggattattacacgtgtacactagatctgatggttgtgaaatatttatgcacggtgcataagga 39099223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 52987537 - 52987692
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  52987537 aattgtagagag--agagggagagctttatgttttagtgagagaaatatttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattatt 52987634  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  52987635 acacgtgtacactagatctgatggttgtgaagtgtttatgcacggtgcataaggattt 52987692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 50754173 - 50754029
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||    
T  50754173 gagagggagagctttatgttttagtgagagaagtgtttgaatcaaatgaagtttgatttggtgtagtttgagaagcctaggattattacacgtgtacact 50754074  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    | |||| ||||||||||||||||||||||||||||||||||||||    
T  50754073 agatctgatggttgtgaagtgtttatgcacggtgcataaggattt 50754029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 51362326 - 51362480
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  51362326 aattgtagagag--agagggaaag-tttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcctaggattatt 51362422  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||    
T  51362423 acacgtgtacactaaatctgatggttgtgaagtgtttatgcacggtgcataaggattt 51362480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 7045188 - 7045342
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||    
T  7045188 aattgtagagag--agagggagagctttatgttttagtgagagaaatgtttgaagcaaat-aagtttgatttgatgtagtctgagaagcctacgattatt 7045284  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| |||| ||||||||||||||||||| ||||||||||||| ||||    
T  7045285 acacgtgtacactagatctgatggttgtgaagtgtttatacacggtgcataagaattt 7045342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 19385213 - 19385357
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||||||| ||    
T  19385213 gagagggagagttttatgttttagtgagggaaatgattgaagcaaatgaagtttgatttgatgtagtttgagaagcctagaattattacacgtgtacact 19385312  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    | |||| ||||||||||||||||||||||||||||||||||||||    
T  19385313 aaatctgatggttgtgaagtgtttatgcacggtgcataaggattt 19385357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 16277342 - 16277456
Alignment:
Q  157 aaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcac 256  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||| ||| || | |||||||||||||||||||||||    
T  16277342 aaatgtttgaaacaaatgaagtttgatttggtgtagtttgagaagcgtaggattattacacgtgtacactagatatgatggttgtgaagtgtttatgcac 16277441  T
Q  257 ggtgcataaggattt 271  Q
    ||||||||| |||||    
T  16277442 ggtgcataaagattt 16277456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7045124 - 7045188
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  7045124 ctctggcaggcgaccaccgcgtcggaatcatcatgtgtggctggaagagatgaagactcatctga 7045188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 51362262 - 51362326
Alignment:
Q  19 ctctggccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||| || |||||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  51362262 ctctggccgacgaccaccgcgtcagaatcatcatgtgtggccggaagagatgaagactcatctga 51362326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 23699443 - 23699356
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||| |||||||||| || |||| |||||||||||||||||  || || | |||||||||||||||||||||| |||| |||||    
T  23699443 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23699356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 23717898 - 23717811
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||| |||||||||| || |||| |||||||||||||||||  || || | |||||||||||||||||||||| |||| |||||    
T  23717898 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23717811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 23736354 - 23736267
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||| |||||||||| || |||| |||||||||||||||||  || || | |||||||||||||||||||||| |||| |||||    
T  23736354 ttgatttgatgtagtttgaaaagcctaggattattacacgtgtacattagatatgatggttgtgaagtgtttatgcagggtgtataag 23736267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 52987486 - 52987537
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  52987486 ccaccgcgccggaatcatcatgtgtggccgaaagagatgaagactcatctga 52987537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 17627197 - 17627258
Alignment:
Q  195 tgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcac 256  Q
    |||||||||||  |||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  17627197 tgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatgcac 17627258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 19385156 - 19385206
Alignment:
Q  33 caccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||| ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19385156 caccacgccggaatcatcatctgtggccggaagagatgaagactcatctga 19385206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 50754233 - 50754182
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||| |||||||||||||||||||||| |||||||||| |||| ||||||||    
T  50754233 ccactgcgccggaatcatcatgtgtggtcggaagagattaagactcatctga 50754182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 51846784 - 51846819
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  51846784 aatggttgtgaagtgtttatgcacggtgcataagga 51846819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 3475407 - 3475446
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  3475407 atctgatggttgtgatgtgtttatgcacggtgcataagga 3475446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 9595980 - 9596019
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  9595980 atctgatggttgtgatgtgtttatgcacggtgcataagga 9596019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 19284737 - 19284698
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  19284737 atctgatggttgtgatgtgtttatgcacggtgcataagga 19284698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 23755394 - 23755312
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||| |||| |||||||| |||| |||||||||||||||||  ||        |||||||||||||||||||| ||||||||||||    
T  23755394 ttgatttgatgtaatttgagaagcctaggattattacacgtgtacattag-------ggttgtgaagtgtttatgcagggtgcataagga 23755312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 26662538 - 26662577
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  26662538 atctgatggttgtgatgtgtttatgcacggtgcataagga 26662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 31852335 - 31852284
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||||||| |||| ||||||||| || ||||||||||||| ||||||||    
T  31852335 ccaccgcgccgaaatcgtcatgtgtgccctgaagagatgaagactcatctga 31852284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 33414013 - 33414052
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  33414013 atctgatggttgtgatgtgtttatgcacggtgcataagga 33414052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 41192354 - 41192389
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41192354 aatggttgtgaagtgtttatgtacggtgcataagga 41192389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 46237758 - 46237797
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  46237758 atctgatggttgtgatgtgtttatgcacggtgcataagga 46237797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 47335098 - 47335059
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  47335098 atctgatggttgtgatgtgtttatgcacggtgcataagga 47335059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 54379224 - 54379190
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||| ||||||||||||||||||||||||    
T  54379224 atggttgtgatgtgtttatgcacggtgcataagga 54379190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 34563351 - 34563384
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||||||| |||||||||||||||||||||    
T  34563351 aatggttgtgaaatgtttatgcacggtgcataag 34563384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 47728454 - 47728417
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  47728454 atctgatggttgtgaagtgtttatgcagggtgcataag 47728417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 53595034 - 53594997
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataag 266  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  53595034 atctgatggttgtgaagtgtttatgcagggtgcataag 53594997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 31852278 - 31852242
Alignment:
Q  122 agagtgagagggagagctttatgttttagtgagagaa 158  Q
    |||| |||||||||| |||||||||||||||||||||    
T  31852278 agagagagagggagaactttatgttttagtgagagaa 31852242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 24737589 - 24737726
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||    
T  24737589 gagagggagagttttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttaagaagcctaggattattacacgtgtacact 24737688  T
Q  227 atatctaatggttgtgaagtgtttatgcacggtgcata 264  Q
    | |||| |||||||||||||||||||||||||||||||    
T  24737689 agatctgatggttgtgaagtgtttatgcacggtgcata 24737726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 271
Target Start/End: Original strand, 33346258 - 33346413
Alignment:
Q  114 aattgtagagagtgagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattatt 213  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||| ||||  ||||||    
T  33346258 aattgtagagag--agagggagaactttatgttttagtgagagaaatgtttgaagcaaacgaagtttgatttgacgtagtttgagaagcctataattatt 33346355  T
Q  214 acacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||    
T  33346356 acacgtgtacactagatttgatggttgtgaagtgtttatgcacggtgcataaggattt 33346413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 877375 - 877246
Alignment:
Q  127 gagagggagagctttatgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgct 226  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||| |     
T  877375 gagagggagagctttttgttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaagcttatgattattatacgtgtacacc 877276  T
Q  227 atatctaatggttgtgaagtgtttatgcac 256  Q
      ||||||||||||||||||||||||||||    
T  877275 tgatctaatggttgtgaagtgtttatgcac 877246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 29157341 - 29157249
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||||||||||||| ||||  |||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||    
T  29157341 ttgatttggtgtagtttgagaagcctagtattattacacgtgtacactagatctgatggttgtaaagtgtttatgcacggtgcataaggattt 29157249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 18611304 - 18611218
Alignment:
Q  179 ttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataa 265  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||  ||||||||    
T  18611304 ttgatttggtgtggtttgagaagcctatgattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagagtgcataa 18611218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 34399740 - 34399664
Alignment:
Q  195 tgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||| |||| ||||||||||||||||| ||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  34399740 tgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttatatacggtgcataaggattt 34399664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 24737529 - 24737580
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  24737529 ccaccgtgccggaatcatcatgtgtggccggaagagatgaagactcatctga 24737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 15034920 - 15035017
Alignment:
Q  179 ttgatttggtgtagtttgaga-----aacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||||||||||||     | |||| ||||||||||| ||||| ||| |||| |||||||||||   ||||||||||||||||||||||||    
T  15034920 ttgatttggtgtagtttgagaggagaagcctatgattattacacatgtacactagatctgatggttgtgaatgatttatgcacggtgcataaggattt 15035017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 33346207 - 33346258
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33346207 ccaccacgccggaatcatcatgtgtggccgaaagagatgaagactcatctga 33346258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 12394380 - 12394422
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  12394380 atctaaaggttgtgaagtgtttatgcacggtgcataaggattt 12394422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 35119310 - 35119261
Alignment:
Q  219 tgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||||    
T  35119310 tgtacactagatctgatggttgtgaagtgtttatgcacggtgcataagga 35119261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 30908714 - 30908679
Alignment:
Q  233 aatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  30908714 aatggttgtgaagtgtttatgcacggtgcataagga 30908679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 877432 - 877390
Alignment:
Q  32 ccaccgcgccggaatcatcatgtgtggccggaagagatgaaga 74  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  877432 ccaccacgccggaatcatcatgtgtggcctgaagagatgaaga 877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 1449608 - 1449569
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1449608 atctgatggttgtgatgtgtttatgcacggtgcataagga 1449569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 1536896 - 1536935
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1536896 atctgatggttgtgatgtgtttatgcacggtgcataagga 1536935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 6900869 - 6900830
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  6900869 atctgatggttgtgatgtgtttatgcacggtgcataagga 6900830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 31216728 - 31216689
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  31216728 atctgatggttgtgatgtgtttatgcacggtgcataagga 31216689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 266
Target Start/End: Original strand, 27079939 - 27079967
Alignment:
Q  238 ttgtgaagtgtttatgcacggtgcataag 266  Q
    |||||||||||||||||||||||||||||    
T  27079939 ttgtgaagtgtttatgcacggtgcataag 27079967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 25148 - 25274
Alignment:
Q  145 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||| |||||||||||    
T  25148 ttttagtgagagaaatgtttgaagcaaatgaagtttgatttggtgtagtttgagaaacctaagattatgacacgtgtacactaaatctgatggttgtgaa 25247  T
Q  245 gtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||||||||||||||||||    
T  25248 gtgtttatgcacggtgcataaggattt 25274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 25053 - 25112
Alignment:
Q  24 gccggcgcccaccgcgccggaatcatcatgtgtggccggaagagatgaagagtcatctga 83  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  25053 gccggcgaccactgcgccggaatcatcatgtgtggccggaagagatgaagactcatctga 25112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 7116 - 7040
Alignment:
Q  195 tgagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    ||||||||||| |||||||||| |||||| ||| |||| ||||||||||||||||||||||||||| |||| |||||    
T  7116 tgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatgcacggtgtataaagattt 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 10642 - 10717
Alignment:
Q  196 gagaaacctacgattattacacgtgtacgctatatctaatggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||| ||||||||||  || || ||| |||| ||||||||||||||||||||||||||| ||||||||||    
T  10642 gagaaacctaggattattacatatgcacactagatctgatggttgtgaagtgtttatgcacggtgtataaggattt 10717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 676 - 715
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  676 atctgatggttgtgatgtgtttatgcacggtgcataagga 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 33750 - 33711
Alignment:
Q  229 atctaatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  33750 atctgatggttgtgatgtgtttatgcacggtgcataagga 33711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 11195 - 11232
Alignment:
Q  234 atggttgtgaagtgtttatgcacggtgcataaggattt 271  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  11195 atggttgtgaagtgcttatgcacagtgcataaggattt 11232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 24337 - 24301
Alignment:
Q  232 taatggttgtgaagtgtttatgcacggtgcataagga 268  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  24337 taatggttgtgatgtgtttatgcacggtacataagga 24301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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