View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_46 (Length: 250)
Name: NF9287_low_46
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 29790214 - 29790454
Alignment:
| Q |
1 |
agtttagtagatatgttgacaattatacacaatcaattaaaaaattagatacttgtgcaaccannnnnnnncaatttgacttgttgatagagtactgtta |
100 |
Q |
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| T |
29790214 |
agtttagtagatatgttgacaattatacacaatcaattaaaaaattagatacttgtgcaaccattttttttcaatttgacttgttgatagagtactgtta |
29790313 |
T |
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| Q |
101 |
atgacccaaattatcaaactatcatagtctaattacaatattcccagaaagacacacagtaatggcataccaatccaaaattaaccaaaaacatgtgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29790314 |
atgacccaaattatcaaactatcatagtctaattacaatattcccagaaagacacacagtaatggcataccaatccaaaattaaccaaaaacatgtgatt |
29790413 |
T |
|
| Q |
201 |
aaactccccggagaatgttagagtttagaggagcatctcat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
29790414 |
aaactccccggagaatgttagagtttagaggagcatctcat |
29790454 |
T |
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