View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_50 (Length: 240)
Name: NF9287_low_50
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13409555 - 13409775
Alignment:
| Q |
1 |
tgtttgcctctgagtcacaacaccaacacgtgtaactaagttctattaattcattttttcaaattattatcgaaattgacgtgttcgtatacattattat |
100 |
Q |
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| T |
13409555 |
tgtttgcctctgagtca--acaccaacacgtgtaactaagttctattaatttattttttcaaattattatcgatattgatgtgttactatt-attattat |
13409651 |
T |
|
| Q |
101 |
ctcttgtgtccgtgtctgtgtttcatttattattactagtacaaaatgttttgacagaaaactattgtttctacaaattttcatcaacaaaatatcataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13409652 |
ctcttgtgtccgtgtctgtgtttcatttattattactagtacaaaatgttttgacagaaaactattgtttctacaaattttcatcaacaaaatatcataa |
13409751 |
T |
|
| Q |
201 |
aactgatcaaactatcatctttat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
13409752 |
aactgatcaaactatcatctttat |
13409775 |
T |
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