View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9287_low_56 (Length: 219)
Name: NF9287_low_56
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_56 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 7523584 - 7523387
Alignment:
| Q |
1 |
aagaatgggatgtggtggatttacaaaaccgcctctattttaaggtttaaatacccaaattattcatggtaaaatttactctaaatattagatatgccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7523584 |
aagaatgggatgtggtggatttacaaaaccgcctctgttttaaggtttaaatacccaaattattcatggtaaaatttactctaaatattagatatgctag |
7523485 |
T |
|
| Q |
101 |
caacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttctattgttacatttcatcatggatattc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7523484 |
caacacacaatttccttttatgtcaatttgtatcaattgtcatatcttaaatgcatacgtgatttttcttctattgttacatttcatcatggatattc |
7523387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 7522346 - 7522464
Alignment:
| Q |
84 |
aatattagatatgccagcaacacacaatttccttttatgtcaatttgtatcaattgtcatatcttagatgtatacgtgatttttcttctattgttacatt |
183 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||| ||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
7522346 |
aatattagatatgctagcaacacacaatttccttt-aggtcaatgtgtatcaattgtcatatcttaaatgcatatgtgattcttcttctcatgttacatt |
7522444 |
T |
|
| Q |
184 |
tcatc--atggatattcctt |
201 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
7522445 |
tcatcatatggatattcctt |
7522464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University