View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9287_low_58 (Length: 201)

Name: NF9287_low_58
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9287_low_58
NF9287_low_58
[»] chr3 (1 HSPs)
chr3 (117-190)||(30164189-30164262)
[»] chr4 (2 HSPs)
chr4 (117-190)||(7660171-7660244)
chr4 (10-47)||(7660064-7660101)
[»] chr8 (1 HSPs)
chr8 (118-190)||(45566698-45566770)


Alignment Details
Target: chr3 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 30164189 - 30164262
Alignment:
Q  117 cgatgaagctgatgtcttggaatattagaggtttgggtgggttggggaagaaaagggaggttcggtctgtgctg 190  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  30164189 cgatgaagctggtgtcttggaatattagaggtttgggtgggttggagaagaaaagggaggttcggtctttgctg 30164262  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 7660171 - 7660244
Alignment:
Q  117 cgatgaagctgatgtcttggaatattagaggtttgggtgggttggggaagaaaagggaggttcggtctgtgctg 190  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  7660171 cgatgaagctggtgttttggaatattagaggtttgggtgggttggagaagaaaagggaggttcggtctttgctg 7660244  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 7660064 - 7660101
Alignment:
Q  10 gaaaggtaagaaaaagaggttttctgagggtgaggacg 47  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7660064 gaaagggaagaaaaagaggttttctgagggtgaggacg 7660101  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 45566698 - 45566770
Alignment:
Q  118 gatgaagctgatgtcttggaatattagaggtttgggtgggttggggaagaaaagggaggttcggtctgtgctg 190  Q
    ||||||| || |||||||| ||||||| ||||||||||| || | ||||||||||||||| |||||| |||||    
T  45566698 gatgaagttggtgtcttgggatattaggggtttgggtggtttagagaagaaaagggaggtacggtctctgctg 45566770  T

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