View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9287_low_6 (Length: 579)
Name: NF9287_low_6
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9287_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 36998626 - 36998286
Alignment:
| Q |
19 |
cataatacccgtgttggtggaaatccaaatgccacagggtataccactggtggtacttataaatgaatacaatgatagctaactgcttcattacacacaa |
118 |
Q |
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| T |
36998626 |
cataatacccgtgttggtggaaatccaaatgccacagggtacaccactggtggtacttataaatgaatacaatgatagctaactgcttcattacacacaa |
36998527 |
T |
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| Q |
119 |
aataaggtttagtttatgtggtcgtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgtttgtttcatttccttttcttttt |
218 |
Q |
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| T |
36998526 |
aataaggtttagtttatgtggttgtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgtttgtttcatttccttttcttttt |
36998427 |
T |
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| Q |
219 |
tggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatttcactttgcttgaataaataaaa |
318 |
Q |
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| T |
36998426 |
tggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatttcactttgcttgaataaataaaa |
36998327 |
T |
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| Q |
319 |
aattaggagagtttaataattatacataaattatactcgct |
359 |
Q |
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| T |
36998326 |
aattaggagagtttaataattatacataaattatactcgct |
36998286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 363 - 568
Target Start/End: Complemental strand, 36998251 - 36998050
Alignment:
| Q |
363 |
ttttctatttttaattaaatagaacaatgnnnnnnnnaaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacattcaaaactga |
462 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
36998251 |
ttttgtatttttaattaaatagaacaatgttttttt-aaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacgttaaaaactga |
36998153 |
T |
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| Q |
463 |
tgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatattaatgttagattttacaaccttataatgctcaca |
562 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
36998152 |
tgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccatatat---tgttagattttacaaccttattatgctcaca |
36998056 |
T |
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| Q |
563 |
ggttct |
568 |
Q |
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| |||| |
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| T |
36998055 |
gtttct |
36998050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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